Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23780 661 / 0 NRPE2, DMS2, DRD2, NRPD2a DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) AT3G18090 659 / 0 NRPD2B nuclear RNA polymerase D2B (.1) AT4G21710 348 / 3e-101 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) AT5G45140 249 / 6e-68 NRPC2 nuclear RNA polymerase C2 (.1) AT1G29940 245 / 2e-66 NRPA2 nuclear RNA polymerase A2 (.1) ATCG00190 112 / 8e-25 ATCG00190.1, RPOB RNA polymerase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027166 [exp] 1102 / 0 AT3G23780 1435 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10015446 [exp] 345 / 3e-100 AT4G21710 2298 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10011182 [exp] 332 / 2e-95 AT4G21710 2293 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10017504 [exp] 264 / 8e-73 AT5G45140 1652 / 0.0 nuclear RNA polymerase C2 (.1) Lus10028778 [exp] 259 / 1e-70 AT5G45140 1711 / 0.0 nuclear RNA polymerase C2 (.1) Lus10026157 [exp] 247 / 6e-67 AT1G29940 1574 / 0.0 nuclear RNA polymerase A2 (.1) Lus10011322 [exp] 188 / 1e-50 AT5G45140 468 / 2e-153 nuclear RNA polymerase C2 (.1) Lus10012207 [exp] 74 / 2e-15 AT5G45140 150 / 6e-44 nuclear RNA polymerase C2 (.1) Lus10039408 [exp] 46 / 0.0001 AT5G45140 129 / 9e-34 nuclear RNA polymerase C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G019100 [exp] 722 / 0 AT3G23780 1694 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.004G043200 [exp] 345 / 2e-100 AT4G21710 2271 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Potri.006G263900 [exp] 264 / 2e-80 AT3G23780 253 / 5e-77 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.015G003000 [exp] 254 / 1e-69 AT5G45140 1826 / 0.0 nuclear RNA polymerase C2 (.1) Potri.001G030750 [exp] 240 / 7e-65 AT1G29940 1674 / 0.0 nuclear RNA polymerase A2 (.1) Potri.013G142232 [exp] 116 / 6e-26 ATCG00190 2015 / 0.0 RNA polymerase subunit beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04561 [flax] [poplar] RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 PF04565 [flax] [poplar] RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 PF04563 [flax] [poplar] RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04560 [flax] [poplar] RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7 CL0410 [flax] [poplar] LEF-8-like PF00562 [flax] [poplar] RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6
Representative CDS sequence Show only first row Show all	>Lus10039677 pacid=23165352 polypeptide=Lus10039677 locus=Lus10039677.g ID=Lus10039677.BGIv1.0 annot-version=v1.0 ATGGGCTTGCCGGGTATGATGGAGGTAGAGGAAGTGGGCACGAGTAACGGAAACGCGGCTCCCGATGCGTTCGATGACTTTGATATCGATGATCTATTCG ACGACGATGACGGTCAAGAGTTCACCGATTTGGCAACTTTGAGAGGGATTGGGGAGGTAAAGTTAAAGAACTTGTGTAAATGGGCAGCGACTCAGTTTTT CAACGAGTATGGACTCATCAGTCACCAGATAAACTCGTACAATGATTTTATCCACAATGGCCTCCAACGGGTGTTTGATTCCTTTGGTGAGATACTCGTC GAGCCTGGGTATGATCCGTCCAAGAAAGGGGAAGGTGACTGGCGATATGCTTCGGTTAAGTTTGGGAAAGTTAGCCTTGAAAGACCTAACTTCTGGGCTC CATCGTTGGAATCTGAGAACAACGAGCGTAAGATGCTCCCCAGGGATGCTCGCCTGCAGAATATGACCTACGCTGCTAGGATCAAAGTTCAAGTCACGTT CAAGGTATATACGCAAAAGGTTATTGCAAGTGACAAGTTTAAGACAGGGCAAAATAAAATTCTTGATAAAGAGATTCTCAAAGACGAGACGGAAGATATG ATAATAGGGAGTATCCCTGTGATGGTGAAGTCTGACCTCTGTTGGATGAAGACAGAAGATAAAGGTGATTGCGACTTTGATCAAGGCGGCTACTTTGTGA TAAAGGGTGCTGAGAAGGTTTTCATTGCTCAAGAGCAAACTTGTATGAAGAGACTATGGATAGTGAGTAGTCCCTGTTGGACAGTGGGATACAAGTCAGA GGTGAAGAGGAACAGGCTGATTGTTAAGCTATCAGGTTCGGGTAAACCTGGAGAAAAGAAGGTGCTTACAGTTTATTTCCTGTCAACCGAGGTGCCCTTG TGGCTGTTGTTCTTTGCTCTCGGTGTTAAATCAGACAAAGAAGTGGTGGATCTGATAGATTATGACAAGGTTGATCAGAGTGTTACGAATGCACTCTTCG CATCGATTCAAGAAGCTGACGAATATGAGAGCTTTCGCAAGGACAGGAAAGCATTGGTGTATTTGGATGAAATCATTCAGAAGACCCAGTTCCCACCTAG TGAGCGTATGGACGACTGCATTCAGGCGTATCTTTTCCCGAGTCTCCACCATCCTAAACAAAAGGTTCAGTTTCTAGGTTATATGGTGAAGTGCCTCTTA ATGGCCTCTACTGGTCACAGGAGACCTGATAATAGAGATGATTTCAGAAACAAGAGACTAGAGCTCGCTGGCGAGTTGCTAGAGAGGGAGCTGAAAGCGC ACATATTAAATGCGCAGAAACGAATGAAGAAGGCCCTACAGAAAGCCCTCGATGATGGCCGTCTTATACAACCAATCGCTCTATATCTTGATGCTTCAGT AGTAACCAACGGTTTATCTAGAGCATTCTCCACTGGAGCATGGTGTCATCCGTGGAGGAAGATGGAAAGGGTATCAGGGGTGGTAGCAAATCTCGGCCGC ACAAATACACTGCAGACAATAATGGATTTGCGAAGAACCCGCCAGCAGGTCTTGTATACTGGGAAAGCCGGAGATACTAGATACCCGCACCCTTCTCACT GGGGTAGAGTTTGCTTTCTCTCCACTCCTGACGGTGAAAACTGTGGCCTAGTGAAGAATCTATCCATCACAGGCATTGTCAGTACAACAATGATGACTCC TTTGATTGACAAGCTAACAAACTGTGGGATGGAGCTACTTTCTGAAGATTACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNCTCTACAGCGGTCAGAACTGGATCGTGGCGGTGAATGCCCACATGGGGTATAACCAAGAAGATTCCTTGGTGATG AATAGGGCTTCACTGGAGCGTGGAATGTTCCGAACCGAGCATGTGAGGAGTTACAAGGCTGAGGTGGACAATAAGGAGGAGAAGAGGAGAAAGTCCGACG ATGCTGTCAACTTCGGAAAGGTGCAGAGCAAGTTCGGTCGGGTCGACAGTTTGGACGATGACGGTTTCCCTTATATCGGAGCAGATCTGCAGAGTGGTGA TATTGTCGTCGGGAAGTGTAGCGAGTCTGGAGTTGATTGTAGTATCAAGCTGAAACACACTGAAAGAGGCAAGGTTCAGAAGGTTGTTCTGTCTGCTAAT GACGAGGGGAAGAACTTCGCTGTGGTATCGTTGAGACAGGTTCGTACTCCATCCCTGGGAGACAAATTCTCGAGCATGCACGGGCAGAAGGGTGTACTGG GCTTCCTCGAATCTCAAGAGAACTTCCCCTTCACAATCCAGGGGATAGTTCCGGACGTCGTCATTAATCCCCACGCGTTTCCTTCACGACAAACCCCTGG CCAACTCTTGGAGGCTGCTCTGGCGAAAGGAATAGCTTCCGGTGGCAAATTGAAATCCGCAACTCCCTTCTCTGCCGTCTCTGTGGAATCCATTACAGAC CAGCTGCACAGGGCCGGATTCTCGAGATGGGGAAACGAGAGGGTATACAACGGCCGAACCGGAGAAATGGTCGACTCTCTCGTCTTCATGGGCCCCACCT TCTACCAGCGACTGGTCCACATGGCGGAAGACAAAGTAAAGTTCAGAAACACTGGAGCTGTCCACCCACTCACGAGGCAGCCGGTTGCGGATCGAAAGCG ATTCGGTGGGATCAAGTTCGGGGAGATGGAGCGCGACTGCCTGATAGCTCACGGAGCAGCAGCAAACTTGTACGAGCGAGTCTATACGCTGAGCGATTCC TCCCAGATCCACATCTGCCAGGGCTGCAAGAACATAGCCAATGTGATTCAGCGATCGGTCCCAAATGGCCACAAAATTCGGGGGCCTTACTGCCGGGTCT GCAGCTCTGCCGATGAGATCGTGAAGGTGAATATTCCGTATGGAGCGAAGCTGTTGTGCCAGGAGCTTTTCAGCATGGGTATCAACCTGAAGTTCGACAC CAAGCTATGTTGA
AA sequence Show only first row Show all	>Lus10039677 pacid=23165352 polypeptide=Lus10039677 locus=Lus10039677.g ID=Lus10039677.BGIv1.0 annot-version=v1.0 MGLPGMMEVEEVGTSNGNAAPDAFDDFDIDDLFDDDDGQEFTDLATLRGIGEVKLKNLCKWAATQFFNEYGLISHQINSYNDFIHNGLQRVFDSFGEILV EPGYDPSKKGEGDWRYASVKFGKVSLERPNFWAPSLESENNERKMLPRDARLQNMTYAARIKVQVTFKVYTQKVIASDKFKTGQNKILDKEILKDETEDM IIGSIPVMVKSDLCWMKTEDKGDCDFDQGGYFVIKGAEKVFIAQEQTCMKRLWIVSSPCWTVGYKSEVKRNRLIVKLSGSGKPGEKKVLTVYFLSTEVPL WLLFFALGVKSDKEVVDLIDYDKVDQSVTNALFASIQEADEYESFRKDRKALVYLDEIIQKTQFPPSERMDDCIQAYLFPSLHHPKQKVQFLGYMVKCLL MASTGHRRPDNRDDFRNKRLELAGELLERELKAHILNAQKRMKKALQKALDDGRLIQPIALYLDASVVTNGLSRAFSTGAWCHPWRKMERVSGVVANLGR TNTLQTIMDLRRTRQQVLYTGKAGDTRYPHPSHWGRVCFLSTPDGENCGLVKNLSITGIVSTTMMTPLIDKLTNCGMELLSEDYTXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYSGQNWIVAVNAHMGYNQEDSLVM NRASLERGMFRTEHVRSYKAEVDNKEEKRRKSDDAVNFGKVQSKFGRVDSLDDDGFPYIGADLQSGDIVVGKCSESGVDCSIKLKHTERGKVQKVVLSAN DEGKNFAVVSLRQVRTPSLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDVVINPHAFPSRQTPGQLLEAALAKGIASGGKLKSATPFSAVSVESITD QLHRAGFSRWGNERVYNGRTGEMVDSLVFMGPTFYQRLVHMAEDKVKFRNTGAVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLYERVYTLSDS SQIHICQGCKNIANVIQRSVPNGHKIRGPYCRVCSSADEIVKVNIPYGAKLLCQELFSMGINLKFDTKLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10039677 [exp]	0	1
AT5G35753			Domain of unknown function (DU...		Lus10006380 [exp]	1.4	0.9319
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Lus10011245 [exp]	3.0	0.9295
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	3.2	0.9236
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10007652 [exp]	4.0	0.9253
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	5.1	0.9307
AT5G21030			PAZ domain-containing protein ...		Lus10025537 [exp]	6.9	0.9214
AT1G36990			unknown protein		Lus10029655 [exp]	7.5	0.9195
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10022456 [exp]	9.2	0.8891
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10026612 [exp]	9.7	0.8952
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10017973 [exp]	12.7	0.8720

Compare expression of checked genes

Lus10039677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.