Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05710 1669 / 0 ACO3 aconitase 3 (.1) AT4G26970 1577 / 0 ACO2 aconitase 2 (.1) AT4G35830 1568 / 0 ACO1 aconitase 1 (.1.2) AT5G54950 95 / 2e-23 Aconitase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027165 [exp] 1920 / 0 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10015116 [exp] 1795 / 0 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10031561 [exp] 1730 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10028405 [exp] 1578 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10041858 [exp] 1576 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10040070 [exp] 1555 / 0 AT2G05710 1620 / 0.0 aconitase 3 (.1) Lus10021533 [exp] 1452 / 0 AT2G05710 1523 / 0.0 aconitase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153400 [exp] 1716 / 0 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.002G229200 [exp] 1697 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.005G108100 [exp] 1565 / 0 AT4G35830 1668 / 0.0 aconitase 1 (.1.2) Potri.007G060900 [exp] 1563 / 0 AT4G35830 1658 / 0.0 aconitase 1 (.1.2) Potri.015G130201 [exp] 122 / 3e-32 AT4G35830 145 / 2e-41 aconitase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF00694 [flax] [poplar] Aconitase_C Aconitase C-terminal domain CL0364 [flax] [poplar] PF00330 [flax] [poplar] Aconitase Aconitase family (aconitate hydratase)
Representative CDS sequence Show only first row Show all	>Lus10039678 pacid=23165280 polypeptide=Lus10039678 locus=Lus10039678.g ID=Lus10039678.BGIv1.0 annot-version=v1.0 ATGTATATAAACGGCTCTGCCTCGGCTGCCTCTTCGCTCATCCGGAGAGCTTCGTCCAAGGCTAGAAACGTCTCCTCGCTCTCTGCCTCTTCGGCTGCAT CCAGTGGTGGTTCCTCGACGGCGGCGGCGGCGGCAGCACCGAAATTGGCTCTGGGGAATGGACACCAGTTCCAGCAGCAGCGATCTCTGAGCTGCTTCTC CGCGGTTCGATCCCTGCCGCGGTGGAGCCACGGTGTCAATTGGCAGTCTCAGGGTGCTGGTGCCGTACGCGCGCACGGCAGAGCTGCTGGTATCCCTGTG ATTGAGCAGTTCCAGAGGAAGATCGCGTCCATGGCTTCGGAGCATCCTTACAAAGAAATTTTCACGTCCCTTCCCAAGCCAGGTGGTGGTGAATTTGGAA AGTTCTACAGCTTGCCTGCTCTTAACGATCCCCGTATCGATAAGCTTCCCTACTCCATCAGAATTCTGTTGGAATCTGCGATTCGTAATTGTGACAATTT CCAAGTCACCAAAGAAGATGTTGAGAAGATTGTCGACTGGGAAAATTCATCTCCTAAACAAGTAGAGATCCCCTTCAAGCCAGCTCGTGTTCTCTTGCAG GATTTTACTGGAGTACCAGCTGTCGTTGACCTTGCTTCTATGCGTGATGCAATGGGCAACCTCGGCAGTGATCCCAGCAAGATCAATCCTTTGGTCCCAG TTGATCTTGTAATTGACCATTCAGTTCAAGTTGATGTAACCAGATCGGAAAATGCTGTCCAAGCTAATATGGAACTTGAGTTTCAGCGAAATAAGGAAAG ATTTGCTTTCCTGAAATGGGGCTCCACTGCTTTCGATAACATGCTTGTTGTGCCTCCTGGTTCTGGCATTGTGCACCAGGTGAATCTTGAGTATCTTGGC CGAGTCGTCTTCAACAAGGACGGTGTGATGTATCCGGATAGTGTGGTTGGAACTGATTCCCATACTACCATGATTGACGGACTAGGAGTTGCTGGCTGGG GAGTTGGAGGCATTGAAGCTGAGGCCACCATGTTGGGTCAGCCAATGAGCATGGTTCTACCCGGTGTTGTTGGATTTAAGTTGTCTGGGAAATTGCGCAA TGGTGTTACGGCCACTGACTTGGTTCTAACCGTAACTCAAATGCTCAGGAAACACGGTGTTGTCGGGAAATTTGTGGAGTTCTACGGAGGAGGAATGAGG GAGCTATCCCTAGCTGATAGGGCGACCATAGCCAACATGTCACCCGAATATGGTGCAACTATGGGATTCTTCCCAGTAGATCGTGTGACTCTACAATATC TTAAATTGACAGGAAGGAGTGATGAAACTGTTTCAATGATTGAGGCATATCTACGGGCAAATAATATGTTTGTTGACCATGATGAGCCACAACAAGAAGG AGTGTATTCATCATACCTACAACTGGACCTTTCGGAGGTTGAGCCTTGTATTTCTGGACCCAAGAGACCTCATGATCGTGTTGCTCTTAGAGAGATGAAG TCAGACTGGCATTCTTGCCTTGATAGCAAAGTTGGATTCAAGGGTTTTGCCATACCAAAAGAAGCACAAGGTAAAGTGGCTAAGTTCACATTCAATGGGG AACCAGCAGAGCTTAAGCACGGCAGTGGTGTCATAGCTGCAATCACCAGCTGTACCAATACTTCAAATCCAAGTGTCATGCTCGGGGCTGGCCTTGTTGC CAAGAAGGCCCACGAACTTGGCTTGAAGGTCAAGCCATGGGTAAAGACTAGTCTTGCTCCAGGCTCTGGAGTGGTTACAAAATATCTGCTCAAAAGTGGG TTGCAAGAGTATTTGAACCACCAGGGCTTCAACATTGTCGGATATGGTTGCACCACATGCATTGGTAACTCTGGAGATATCGAAGATTCTGTTGCTTCTG CTATCACAGAAAATGACATTGTTGCCTCAGCTGTGCTTTCTGGAAACCGAAACTTTGAAGGTCGTGTTCATGCATTAACAAGAGCAAATTACCTGGCTTC TCCACCGCTAGTGGTTGCTTACGCCCTTGCTGGCACTGTTGACATTGACTTTGACAAAGAGCCCATTGGAAAAGGCAAGGATGGCAAAGATGTCTATTTC AGGGATATCTGGCCAACTACAGAAGAAGTTGCACAGGCTGTTCAATCCAGTGTGTTGCCCGAAATGTTTAAAAGCACATACGAAGCTATCACAAAGGGCA ATCCTATGTGGAACGACCTAAGCGTGCCAACTGCAACATCATACTCCTGGGACCCTAACTCCACCTACATTCACGAGCCACCTTACTTCAAGAACATGAC TCTCGATCCTCCCGGAGCTCGCAAGGTGAAGGATGCCTACTGTCTGCTGAATTTCGGAGACAGCATCACAACCGATCACATCTCCCCGGCAGGAAGCATC CACAAGGACAGCCCCGCCGCCAAGTTCCTCCTTGAGAAGGGTGTTGACCGCAAGGACTTCAACTCCTACGGTAGTCGGCGTGGAAACGACGAGATCATGG CCAGAGGAACTTTTGCTAATATCCGCATCGTTAACAAGCTCCTGAATGGTGAAGTCGGCCCGAAGACTGTTCACGTACCCTCCGGAGAGAAACTCTACGT GTTCGATGCTGCATCGAAATACAAGAACGAAGGACAGGACACCATCATTCTTGCTGGTGCTGAGTATGGTAGTGGAAGCTCCAGAGATTGGGCTGCCAAG GGCCCCATGCTATTGGGAGTTAAAGCAGTGATTGCAAAGAGTTTCGAGAGGATTCATCGCAGCAACTTGGTAGGAATGGGAATAATCCCTCTCTGCTTCA AGGCCGGTCAAGATGCCGACAGTCTAGGCCTCACTGGTCATGAACGGTACACCATCGACCTCCCGAGCAACATCAGCGAGATTAGACCCGGCCAGGATGT CACTGTCACCACCGATAACGGGAAGTCTTTCACCTGCACTGTCCGATTCGACACAGAGGTGGAACTGGAATACTTCAACCATGGAGGCATCCTGCCATAC GTGATCCGCAACCTGATGAAGAAGCAGTGA
AA sequence Show only first row Show all	>Lus10039678 pacid=23165280 polypeptide=Lus10039678 locus=Lus10039678.g ID=Lus10039678.BGIv1.0 annot-version=v1.0 MYINGSASAASSLIRRASSKARNVSSLSASSAASSGGSSTAAAAAAPKLALGNGHQFQQQRSLSCFSAVRSLPRWSHGVNWQSQGAGAVRAHGRAAGIPV IEQFQRKIASMASEHPYKEIFTSLPKPGGGEFGKFYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIVDWENSSPKQVEIPFKPARVLLQ DFTGVPAVVDLASMRDAMGNLGSDPSKINPLVPVDLVIDHSVQVDVTRSENAVQANMELEFQRNKERFAFLKWGSTAFDNMLVVPPGSGIVHQVNLEYLG RVVFNKDGVMYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGGGMR ELSLADRATIANMSPEYGATMGFFPVDRVTLQYLKLTGRSDETVSMIEAYLRANNMFVDHDEPQQEGVYSSYLQLDLSEVEPCISGPKRPHDRVALREMK SDWHSCLDSKVGFKGFAIPKEAQGKVAKFTFNGEPAELKHGSGVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLKVKPWVKTSLAPGSGVVTKYLLKSG LQEYLNHQGFNIVGYGCTTCIGNSGDIEDSVASAITENDIVASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFDKEPIGKGKDGKDVYF RDIWPTTEEVAQAVQSSVLPEMFKSTYEAITKGNPMWNDLSVPTATSYSWDPNSTYIHEPPYFKNMTLDPPGARKVKDAYCLLNFGDSITTDHISPAGSI HKDSPAAKFLLEKGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLNGEVGPKTVHVPSGEKLYVFDAASKYKNEGQDTIILAGAEYGSGSSRDWAAK GPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGQDADSLGLTGHERYTIDLPSNISEIRPGQDVTVTTDNGKSFTCTVRFDTEVELEYFNHGGILPY VIRNLMKKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05710		ACO3	aconitase 3 (.1)		Lus10039678 [exp]	0	1
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	3.6	0.8413
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10030230 [exp]	5.7	0.8307
AT5G60760			P-loop containing nucleoside t...		Lus10016116 [exp]	7.7	0.7982
AT1G61690			phosphoinositide binding (.1)		Lus10018391 [exp]	11.5	0.8150
AT3G19540			Protein of unknown function (D...		Lus10013891 [exp]	14.7	0.7473
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10027760 [exp]	14.9	0.8302
AT1G09050			unknown protein		Lus10004495 [exp]	17.0	0.7859
AT2G47330			P-loop containing nucleoside t...		Lus10011466 [exp]	20.1	0.8118
AT2G46900			unknown protein		Lus10036338 [exp]	20.7	0.7973
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	23.4	0.8110

Compare expression of checked genes

Lus10039678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.