Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32350 228 / 5e-75 Ubiquitin-like superfamily protein (.1) AT4G05230 58 / 4e-10 Ubiquitin-like superfamily protein (.1) AT3G09790 50 / 5e-07 UBQ8 ubiquitin 8 (.1) AT4G03350 44 / 4e-05 EVE1 ETERNALLY VEGETATIVE PHASE 1, ubiquitin family protein (.1) AT4G03370 42 / 0.0003 Ubiquitin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007641 [exp] 70 / 8e-14 AT4G05230 145 / 1e-42 Ubiquitin-like superfamily protein (.1) Lus10018369 [exp] 55 / 2e-09 AT4G05230 143 / 5e-44 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G037600 [exp] 246 / 7e-82 AT2G32350 294 / 4e-101 Ubiquitin-like superfamily protein (.1) Potri.004G022400 [exp] 89 / 7e-21 AT4G05230 144 / 1e-42 Ubiquitin-like superfamily protein (.1) Potri.005G096700 [exp] 44 / 2e-05 AT1G31340 270 / 2e-94 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Lus10039679 pacid=23165149 polypeptide=Lus10039679 locus=Lus10039679.g ID=Lus10039679.BGIv1.0 annot-version=v1.0 ATGAAGGAGGTAACAATCGTATCCTGCCAGGGCGAATTCCCCATTGAAATCTCCGAGCAGGAGCCGGTACTCGAGATGAAGAGCAAGATTGAATCACTAC TAGGAATCCCGGTCGAATCACAAACGCTATCAGTTTCGAGCTGGGAGCTAATTGACGGGCTCGACATGGAAGATTATCCGATCATCAACCAGGGCACAAG AATCCACCTCGCCATCAAACCAAACCCTCATCACTTCAACCTCACTATCAAACTCCCATCGTCAAAAAACTTCACCGTCCAGGTCGACACAACCGACACG GTTCGAAGCTTGAGGGAGAAGATCGACATTGTAGTACAGCGACGACGACATCCTTGCAGGATGTCGCTGTACTGGTCGGGAGTGGAGCTGGAGGACGAGT TTCGGAACCTGAGCGAGTATGGGGTCCGGGGAGGTGGGGAGGTGGTTGTGTTTTTCAAGAGTGGCGCGAGGGCGGGGCGAGGCAAGGGTTCGGAGGATGA TGGTGGGGTGGTGATCAGGTTGGTGGTGCAGACGGCGTCTTGTTTGTTGGACGGAATTGCGATTCCGGTGGAGGTGAAGGATTCGGGGACTGTTGAGGAG CTGAGGGGGGTTCTGGTGGGGAGTAAAGTGTTGCCGGAAGATGATTATATATTTATACACAGGCAGAGGATCATGAGGGGAAACTGTAGCTTGAGGTGGC ATGGTGTTCAGGATGGTGATGTGGTGTATGTGTTCAAAGGGACAGTTAGTCGCGGCAGCCATTGA
AA sequence Show only first row Show all	>Lus10039679 pacid=23165149 polypeptide=Lus10039679 locus=Lus10039679.g ID=Lus10039679.BGIv1.0 annot-version=v1.0 MKEVTIVSCQGEFPIEISEQEPVLEMKSKIESLLGIPVESQTLSVSSWELIDGLDMEDYPIINQGTRIHLAIKPNPHHFNLTIKLPSSKNFTVQVDTTDT VRSLREKIDIVVQRRRHPCRMSLYWSGVELEDEFRNLSEYGVRGGGEVVVFFKSGARAGRGKGSEDDGGVVIRLVVQTASCLLDGIAIPVEVKDSGTVEE LRGVLVGSKVLPEDDYIFIHRQRIMRGNCSLRWHGVQDGDVVYVFKGTVSRGSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32350			Ubiquitin-like superfamily pro...		Lus10039679 [exp]	0	1
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	1.0	0.9883
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	3.2	0.9545
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10041151 [exp]	4.4	0.8661
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10007208 [exp]	5.2	0.9093
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10008641 [exp]	6.9	0.9273
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013336 [exp]	6.9	0.9295
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10043360 [exp]	7.0	0.9190
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	7.3	0.9347
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020559 [exp]	8.1	0.8870
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10043361 [exp]	8.5	0.8674

Compare expression of checked genes

Lus10039679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.