Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05260 450 / 3e-160 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 429 / 8e-152 Peroxidase superfamily protein (.1) AT3G21770 424 / 4e-150 Peroxidase superfamily protein (.1) AT3G01190 331 / 2e-113 Peroxidase superfamily protein (.1) AT5G15180 331 / 3e-113 Peroxidase superfamily protein (.1) AT1G05240 291 / 1e-97 Peroxidase superfamily protein (.1) AT1G05250 291 / 1e-97 Peroxidase superfamily protein (.1) AT2G39040 267 / 9e-88 Peroxidase superfamily protein (.1) AT5G42180 258 / 8e-85 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT3G03670 256 / 5e-84 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027164 [exp] 628 / 0 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 532 / 0 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 529 / 0 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039681 [exp] 431 / 2e-152 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027163 [exp] 429 / 9e-152 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10018374 [exp] 342 / 1e-117 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007638 [exp] 330 / 1e-112 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10006756 [exp] 318 / 3e-108 AT3G01190 379 / 3e-132 Peroxidase superfamily protein (.1) Lus10032926 [exp] 280 / 4e-93 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G122100 [exp] 464 / 6e-166 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 454 / 7e-162 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 431 / 2e-152 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 353 / 4e-122 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 352 / 1e-121 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 352 / 1e-121 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 352 / 1e-121 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 352 / 1e-121 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 348 / 3e-120 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 340 / 7e-117 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10039680 pacid=23165139 polypeptide=Lus10039680 locus=Lus10039680.g ID=Lus10039680.BGIv1.0 annot-version=v1.0 ATGGAGGGATCCCATCTCTTCTTTACTCTTCTTTTGGCAATCTTTGTTGCATCAACTCAAGCTCAGCTCCAGATGAACTTCTACTCCCAGAGCTGCCACA GAGCAGAGCAGATCGTCCTAGATTATGTCAAGGAACACATCTCCAATGCTCCCACCCTCGCCTCTCCGATCCTCCGAATGCATTTCCACGACTGCTTCGT CAGGGGGTGTGATGCTTCTGTGATGATCAACTCGACTTCTAACAACACGGCTGAGAAGGCTGCGGCTCCGAATTTGACTCTAAGAGGGTTTAACTTCCTC GACGGTCTCAAGAGCTTGCTCGAGAAAGAGTGCCCTGGCGTTGTCTCTTGTGCTGATATCCTTGCTCTTACGGCTAGAGACTCGGTTGCTCTTATTGGTG GACCGACGTGGAATGTTCCAACGGGGAGAAGGGACGGGAGGATCTCAAACTCGTCAGAGGCGCTTAACGCCATCCCTCCTCCGACGAGCAACTTCACCAC CCTCCAGAGGTTATTCGGGAACGTTGGTCTCGATTTGAAGGACTTGGTCCTCCTCTCCGCGGCCCACACGATCGGGATATCTCACTGCAACTCGTTCTCG GCCCGGCTTTACAACTTCACGGGTCGGGGCAACGGGCAGGACCCGGCCCTGGACAGCGAGTATGCGACGAAGTTGAAAATGAAGTGTATGAACACGACCG ACAATGTGACCATTGTGGAGATGGACCCGGGGAGTTTCAGGTCATTCGATCTAAGCTACTTCCAGCTGGTCCAAAAGAGGAGAGGGTTGTTCCAATCCGA TGCCGCATTGAGCACGAGTAGCACCACGATGTCGCTCATAAACCAGTTCGGTTCGGGTTCCGTTCAGAACTTCTTCACCGAGTTTGCTCTGTCCATGGAG AAGATGGGCCGGATCAATGTGAAGACCGGGTCGGCTGGTGAGATCCGGAGGAATTGTGCCGTGGTTAATTAA
AA sequence Show only first row Show all	>Lus10039680 pacid=23165139 polypeptide=Lus10039680 locus=Lus10039680.g ID=Lus10039680.BGIv1.0 annot-version=v1.0 MEGSHLFFTLLLAIFVASTQAQLQMNFYSQSCHRAEQIVLDYVKEHISNAPTLASPILRMHFHDCFVRGCDASVMINSTSNNTAEKAAAPNLTLRGFNFL DGLKSLLEKECPGVVSCADILALTARDSVALIGGPTWNVPTGRRDGRISNSSEALNAIPPPTSNFTTLQRLFGNVGLDLKDLVLLSAAHTIGISHCNSFS ARLYNFTGRGNGQDPALDSEYATKLKMKCMNTTDNVTIVEMDPGSFRSFDLSYFQLVQKRRGLFQSDAALSTSSTTMSLINQFGSGSVQNFFTEFALSME KMGRINVKTGSAGEIRRNCAVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10039680 [exp]	0	1
AT1G24530			Transducin/WD40 repeat-like su...		Lus10006233 [exp]	3.0	0.8246
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Lus10037094 [exp]	5.9	0.8466
					Lus10012740 [exp]	11.5	0.7998
AT4G00440			Protein of unknown function (D...		Lus10014776 [exp]	16.6	0.7892
AT1G08125			S-adenosyl-L-methionine-depend...		Lus10021425 [exp]	17.9	0.8262
AT1G54740			Protein of unknown function (D...		Lus10035353 [exp]	22.0	0.8054
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042740 [exp]	40.2	0.7638
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10027878 [exp]	48.2	0.7729
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10033061 [exp]	57.2	0.7666
AT1G70140		ATFH8	formin 8 (.1)		Lus10029212 [exp]	64.3	0.7046

Compare expression of checked genes

Lus10039680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.