Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11290 481 / 2e-172 Peroxidase superfamily protein (.1) AT1G05260 452 / 6e-161 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT3G21770 426 / 9e-151 Peroxidase superfamily protein (.1) AT5G15180 340 / 9e-117 Peroxidase superfamily protein (.1) AT3G01190 334 / 1e-114 Peroxidase superfamily protein (.1) AT1G05240 304 / 1e-102 Peroxidase superfamily protein (.1) AT1G05250 304 / 1e-102 Peroxidase superfamily protein (.1) AT2G18150 282 / 7e-94 Peroxidase superfamily protein (.1) AT4G36430 276 / 2e-91 Peroxidase superfamily protein (.1) AT2G39040 272 / 8e-90 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027163 [exp] 617 / 0 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10027164 [exp] 437 / 4e-155 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 432 / 3e-153 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039680 [exp] 431 / 2e-152 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 431 / 2e-152 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10018374 [exp] 347 / 2e-119 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007638 [exp] 340 / 9e-117 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10006756 [exp] 329 / 2e-112 AT3G01190 379 / 3e-132 Peroxidase superfamily protein (.1) Lus10007051 [exp] 277 / 6e-92 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G038100 [exp] 505 / 0 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 486 / 3e-174 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 474 / 1e-169 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 364 / 4e-126 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 361 / 5e-125 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 355 / 1e-122 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 352 / 3e-121 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 351 / 6e-121 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 350 / 1e-120 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 348 / 7e-120 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10039681 pacid=23165112 polypeptide=Lus10039681 locus=Lus10039681.g ID=Lus10039681.BGIv1.0 annot-version=v1.0 ATGGAAAGGCTTAGCTTTTCTTCTGTGGCATTACTTGTAATGGTGGTTGCTCTTGTTTCGGTCGAATCGGCCAATGCTCAGTTGAAGATGGGTTTTTACT CCAAGAGCTGCCCCAAAGCGGAAAATATCATACAGGACTTCGTCCACCAGCACATCTCCAACGTCCCTTCTCTTGCCGCCACCTTCATCAGGATGCATTT CCATGACTGCTTTGTCAGGGGATGTGATGCGTCGGTGCTCCTGAACACAACCTCAGGGGAGCAACTCGAGAAGCAAGCGCCTCCGAACCTGACACTTAGA GGGTTCGACTTCATCGACAGGGTGAAGAGCCTCGTCGAAGCTGAATGCCCCGGAGTTGTCTCCTGTGCTGATGTTCTGACTTTGGTCACTAGGGACTCAA TCGTTGCAGTTGGCGGTCCGTCCTGGAGAGTTCCTACGGGGCGAAGAGACGGGGTGATCTCTCGGTTTTCGGAATCTCTGAACAACATTCCTCCTCCATT TGCCAACTTCACCACTCTCCAGATAATGTTTGCCAACCAAGGGCTTAATGTGAAAGACCTTGTGTTGCTTTCAGGGGCTCATACTATTGGCATTTCACAT TGCTCCTCATTCTCCAACCGGCTCTACAACTTCACAGGCAGGGGAGACGCCGATCCGGCCCTAGACACCAGCTACGCCTCGAATCTAAGGTCGAGAAAGT GTCGAAGCATCGGGGACAACACAACGAAGGTCGAGATGGACCCCGGTAGCAGGAACACCTTTGACCTGAGCTACTACTCCTTGCTCCTGAAAAGGAGAGG ACTGTTCGAGTCGGATGCTGCCCTGATAACCAACTCTGCCTCGTTGCAACTCGTCGAGAAGATCACGAAAGGCTCCGTGAAGGATTTCTTCGACGAGTTC GCTCTAGCCATGGAGAAGCTGGGTCGGGTGAATGTGAAAACCGGATCCAGTGGTGAGATCAGGAAGCAATGTGCTTTGGTTAATTAA
AA sequence Show only first row Show all	>Lus10039681 pacid=23165112 polypeptide=Lus10039681 locus=Lus10039681.g ID=Lus10039681.BGIv1.0 annot-version=v1.0 MERLSFSSVALLVMVVALVSVESANAQLKMGFYSKSCPKAENIIQDFVHQHISNVPSLAATFIRMHFHDCFVRGCDASVLLNTTSGEQLEKQAPPNLTLR GFDFIDRVKSLVEAECPGVVSCADVLTLVTRDSIVAVGGPSWRVPTGRRDGVISRFSESLNNIPPPFANFTTLQIMFANQGLNVKDLVLLSGAHTIGISH CSSFSNRLYNFTGRGDADPALDTSYASNLRSRKCRSIGDNTTKVEMDPGSRNTFDLSYYSLLLKRRGLFESDAALITNSASLQLVEKITKGSVKDFFDEF ALAMEKLGRVNVKTGSSGEIRKQCALVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11290			Peroxidase superfamily protein...		Lus10039681 [exp]	0	1
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10042774 [exp]	3.2	0.7478
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10029744 [exp]	8.1	0.7130
AT5G50335			unknown protein		Lus10008207 [exp]	14.3	0.7341
					Lus10012621 [exp]	16.6	0.6311
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	17.7	0.6892
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	18.2	0.7036
AT1G78090		ATTPPB	Arabidopsis thaliana trehalose...		Lus10019010 [exp]	25.0	0.6048
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10000919 [exp]	32.7	0.6519
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10041972 [exp]	34.1	0.6508
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031842 [exp]	36.7	0.6112

Compare expression of checked genes

Lus10039681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.