Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44440 426 / 3e-144 FAD-binding Berberine family protein (.1) AT4G20820 423 / 3e-143 FAD-binding Berberine family protein (.1) AT5G44410 414 / 2e-139 FAD-binding Berberine family protein (.1) AT1G30700 398 / 2e-133 FAD-binding Berberine family protein (.1) AT1G30760 397 / 4e-133 FAD-binding Berberine family protein (.1) AT4G20860 387 / 3e-129 FAD-binding Berberine family protein (.1) AT5G44360 386 / 9e-129 FAD-binding Berberine family protein (.1) AT2G34790 383 / 2e-127 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44400 381 / 2e-126 FAD-binding Berberine family protein (.1) AT1G26380 375 / 2e-124 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032943 [exp] 502 / 6e-174 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 467 / 2e-160 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 464 / 3e-159 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 456 / 8e-156 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 449 / 3e-153 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 439 / 8e-150 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10036147 [exp] 417 / 2e-140 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038446 [exp] 412 / 1e-138 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 410 / 8e-138 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440700 [exp] 527 / 0 AT4G20820 552 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162666 [exp] 513 / 3e-178 AT5G44440 506 / 6e-176 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 510 / 3e-177 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461800 [exp] 509 / 1e-176 AT5G44440 516 / 1e-179 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 509 / 1e-176 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 506 / 9e-176 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461500 [exp] 505 / 3e-175 AT4G20820 519 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462000 [exp] 505 / 3e-175 AT5G44440 520 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162828 [exp] 503 / 1e-174 AT5G44440 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G461900 [exp] 501 / 1e-173 AT4G20820 545 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10039682 pacid=23165223 polypeptide=Lus10039682 locus=Lus10039682.g ID=Lus10039682.BGIv1.0 annot-version=v1.0 ATGTTCCCAAACATCCTCTTCCTCCTCCTTCTTCTTCCGGCGAGCTCCACGTCAGCATCCTCCTCCCACCATGATTTCCTCCTCTGCCTCCGTTCACAAA ACACCGCCGCCGCCGGTGGCGGCTATGTGCACACGCCGGTCGACCCAAATTACACCACATTCCTCCAATCCTCCATAAGGGATCCGAGATTCAACACAAC CCAAACGCCCAAACCGTCTGTAATCCTCACACCGGACACGCTGCCGGAGATCCAAGCCGCCGTTTCCTGCTCGAGCAAGCACGGGCTCCACCTCCGAGTC AGGAGCGGCGGACATGACTATGAGGGCCTATCGTACACATCTAACTACAACAACCACAACTCTTCTTCTGGTCGCCGTCCCACATTTGCAGTTCTGGACC TAGTCAACTTCCGGAATGTCACCGTTGACCTTGCCGGGAAAACAGCATGGGTTGACTCCGGCGCGATTCTAGGCGAGCTATACTACCGGATCGCGGAGAA GAGTCCGAATCTCGCATTTCCGGCAGGCGTCTGCCACACCGTCGGTGTCGGTGGGCACTTCAGCGGAGGCGGGTTCGGTCTTCTGGTGAGGAAGTTCGGC CTAGCGGCAGATAACGTGGTGGACGCGGTATTGGTCAACGCCTACGGCGAAATTCTCAACCGGAAGTTGATGGGGGAAGATCTGTTTTGGGCAATCCGTG GAGGCGGAGGGAACACCTTCGGGATCGTCGTTTCTTGGAAAATTCAATTGGTTAACGTACCGGATAGAGTAACAGCGTTTAGTATCCAGAGGACTTTGGA TCAGAACGCTGGGAAGCTAGTCCACCGATGGCAATCGGTGGCCAGCAGGCTCCCCAATGACTTGATCATTGAAGTCATAGTAAGAACCCAAAATAGTAGT AGTAGTAATAGTACTAAAGTAGCCATTTTCAACGCCCTGTTTCAGGGCGGATCAGAAAGACTGTTGAAACTAATTCAGAGTAGGTTTTCGGAGCTCGGGA TTAGAAAGCGGGATTGCAAGGAGATGAGCTGGTTGGAGGCCATCGTGTTCCAAAGTGGATTTCCGAGCAATACTCCTGTGGAAGTACTGCTCAACAGGTC AATTAGTCCGCCCGTGATCGGTTTGTTCAAATATAAAGGGAAATCCGATTACGTTCAAAACCCGATTCCCGAGGCGGCCCTATTGAAGATATGGGGGAAG TTCGACGAGATCGATGTCGGGTCGAGTGCTATGGTGATGGTGCCGTTTGGGGGGAGGATGAGCGAGATAGCCAAGACTAGCATTCCGTTCCCACACAGAG TTGGGAATTTGTACCAAATCCAACACTTGTCGTATTGGAGCGACGATAGGGACGCGGAAAAACACATCCGTTGGATCAGGGAGTTGTACGATGATCTCGA GCCTTATGTGTCGAAGAATCCGAGGTATGCTTACGTGAACTACAGGGATCTCGACATCGGGATGAATGGAGGAGGTGAAGGGGATGAGAAGGGTACTTAT GGTGAGGCTAAGGTGTGGGGGGAGAAGTACTTTGGGGTCAACTTTGATCGGTTGGTTCGGGTGAAGACGATTGTTGATCCCAATAATGTGTTTCGAAACG AGCAGAGCATTCCCTCAATTCCAACTCGGTTATAA
AA sequence Show only first row Show all	>Lus10039682 pacid=23165223 polypeptide=Lus10039682 locus=Lus10039682.g ID=Lus10039682.BGIv1.0 annot-version=v1.0 MFPNILFLLLLLPASSTSASSSHHDFLLCLRSQNTAAAGGGYVHTPVDPNYTTFLQSSIRDPRFNTTQTPKPSVILTPDTLPEIQAAVSCSSKHGLHLRV RSGGHDYEGLSYTSNYNNHNSSSGRRPTFAVLDLVNFRNVTVDLAGKTAWVDSGAILGELYYRIAEKSPNLAFPAGVCHTVGVGGHFSGGGFGLLVRKFG LAADNVVDAVLVNAYGEILNRKLMGEDLFWAIRGGGGNTFGIVVSWKIQLVNVPDRVTAFSIQRTLDQNAGKLVHRWQSVASRLPNDLIIEVIVRTQNSS SSNSTKVAIFNALFQGGSERLLKLIQSRFSELGIRKRDCKEMSWLEAIVFQSGFPSNTPVEVLLNRSISPPVIGLFKYKGKSDYVQNPIPEAALLKIWGK FDEIDVGSSAMVMVPFGGRMSEIAKTSIPFPHRVGNLYQIQHLSYWSDDRDAEKHIRWIRELYDDLEPYVSKNPRYAYVNYRDLDIGMNGGGEGDEKGTY GEAKVWGEKYFGVNFDRLVRVKTIVDPNNVFRNEQSIPSIPTRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44440			FAD-binding Berberine family p...		Lus10039682 [exp]	0	1
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10021610 [exp]	3.5	0.9191
AT1G61260			Protein of unknown function (D...		Lus10020090 [exp]	7.9	0.8764
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010700 [exp]	9.9	0.8777
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	11.0	0.8986
AT4G34880			Amidase family protein (.1)		Lus10027852 [exp]	13.4	0.8336
					Lus10022462 [exp]	13.5	0.8726
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10018581 [exp]	16.0	0.8776
AT1G66540			Cytochrome P450 superfamily pr...		Lus10032856 [exp]	17.5	0.8808
AT3G47570			Leucine-rich repeat protein ki...		Lus10010199 [exp]	18.8	0.8785
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10029370 [exp]	19.9	0.8734

Compare expression of checked genes

Lus10039682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.