Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25140 140 / 4e-43 OLE1, OLEO1 oleosin 1 (.1) AT2G25890 113 / 1e-32 Oleosin family protein (.1) AT5G51210 106 / 5e-30 OLEO3 oleosin3 (.1) AT5G40420 74 / 8e-17 OLE2, PA23, OLEO2 oleosin 2 (.1) AT3G01570 72 / 2e-16 Oleosin family protein (.1) AT3G27660 71 / 9e-16 OLE3, OLEO4 OLEOSIN 3, oleosin 4 (.1) AT5G07550 67 / 5e-15 ATGRP19, GRP19 glycine-rich protein 19 (.1.2.3) AT3G18570 65 / 1e-13 Oleosin family protein (.1) AT5G61610 66 / 3e-13 Oleosin family protein (.1) AT1G48990 56 / 2e-10 Oleosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027161 [exp] 219 / 4e-74 AT4G25140 154 / 3e-48 oleosin 1 (.1) Lus10031387 [exp] 181 / 1e-59 AT4G25140 164 / 1e-52 oleosin 1 (.1) Lus10010943 [exp] 176 / 2e-52 AT1G22400 535 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10017460 [exp] 155 / 3e-49 AT4G25140 136 / 9e-42 oleosin 1 (.1) Lus10028822 [exp] 149 / 5e-47 AT4G25140 146 / 3e-46 oleosin 1 (.1) Lus10022141 [exp] 94 / 1e-23 AT4G25140 106 / 3e-28 oleosin 1 (.1) Lus10017992 [exp] 79 / 6e-19 AT3G18570 136 / 4e-41 Oleosin family protein (.1) Lus10041987 [exp] 74 / 9e-17 AT3G18570 129 / 2e-38 Oleosin family protein (.1) Lus10032461 [exp] 73 / 2e-16 AT3G18570 142 / 1e-43 Oleosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G150600 [exp] 137 / 4e-42 AT4G25140 124 / 3e-37 oleosin 1 (.1) Potri.001G080000 [exp] 135 / 9e-42 AT4G25140 108 / 1e-30 oleosin 1 (.1) Potri.006G234900 [exp] 102 / 1e-28 AT2G25890 113 / 1e-32 Oleosin family protein (.1) Potri.018G057800 [exp] 96 / 7e-26 AT2G25890 91 / 5e-24 Oleosin family protein (.1) Potri.001G345800 [exp] 79 / 5e-19 AT3G01570 140 / 6e-43 Oleosin family protein (.1) Potri.T125308 [exp] 73 / 1e-16 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.015G081901 [exp] 73 / 1e-16 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.017G071800 [exp] 72 / 1e-16 AT3G01570 130 / 4e-39 Oleosin family protein (.1) Potri.012G083400 [exp] 67 / 2e-14 AT5G40420 97 / 2e-25 oleosin 2 (.1) Potri.012G059400 [exp] 66 / 7e-14 AT3G18570 113 / 4e-32 Oleosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01277 [flax] [poplar] Oleosin Oleosin
Representative CDS sequence Show only first row Show all	>Lus10039683 pacid=23165060 polypeptide=Lus10039683 locus=Lus10039683.g ID=Lus10039683.BGIv1.0 annot-version=v1.0 ATGGATCAGACGCACCAGACATACGCCGGAACCACGCAGAACCCGAGCTATGGCGGCGGGGGCACAATGTACCAGCAGCAGCAGCCGAGGTCTTACCAGG CGGTGAAGGCGGCCACTGCAGCCACCGCGGGTGGATCCCTCATCGTTCTGTCCGGTCTCATCCTTACGGCCACCGTCATTTCACTCATCATAGCCACCCC TCTCCTTGTCATCTTCAGCCCTGTTCTTGTCCCGGCTCTCATCACCGTCGGGCTCTTGATCACCGGGTTTCTTGCTTCCGGTGGGTTCGGAGTCGCCGCC GTCACCGTCTTGTCCTGGATCTATAGGTACGTGACCGGCGGGCACCCGGCGGGAGGGGATTCGCTGGACCAGGCTAGGTCGAAGCTGGCCGGAAAGGCCA GGGAGGTGAAGGACAGGGCGTCGGAGTTCGCACAGCAGCATGTCACAGGTGGTCAACAGACCTCTTAA
AA sequence Show only first row Show all	>Lus10039683 pacid=23165060 polypeptide=Lus10039683 locus=Lus10039683.g ID=Lus10039683.BGIv1.0 annot-version=v1.0 MDQTHQTYAGTTQNPSYGGGGTMYQQQQPRSYQAVKAATAATAGGSLIVLSGLILTATVISLIIATPLLVIFSPVLVPALITVGLLITGFLASGGFGVAA VTVLSWIYRYVTGGHPAGGDSLDQARSKLAGKAREVKDRASEFAQQHVTGGQQTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10039683 [exp]	0	1
AT1G48580			unknown protein		Lus10009051 [exp]	5.3	0.6683
AT1G14200			RING/U-box superfamily protein...		Lus10005237 [exp]	32.3	0.5784
AT5G27750			F-box/FBD-like domains contain...		Lus10035326 [exp]	33.8	0.5211
AT3G19920			unknown protein		Lus10010181 [exp]	39.0	0.5687
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Lus10009834 [exp]	50.0	0.5643
AT4G02160			unknown protein		Lus10010018 [exp]	50.4	0.5532
					Lus10006287 [exp]	57.9	0.5494
AT5G36930			Disease resistance protein (TI...		Lus10007830 [exp]	71.4	0.4814
					Lus10037868 [exp]	79.4	0.5317
AT1G54410			dehydrin family protein (.1)		Lus10020271 [exp]	80.5	0.5176

Compare expression of checked genes

Lus10039683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.