Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31480 1670 / 0 Coatomer, beta subunit (.1.2) AT4G31490 1663 / 0 Coatomer, beta subunit (.1) AT4G23460 66 / 8e-11 Adaptin family protein (.1) AT4G11380 62 / 1e-09 Adaptin family protein (.1.2) AT1G31730 58 / 3e-08 Adaptin family protein (.1) AT1G60070 49 / 2e-05 Adaptor protein complex AP-1, gamma subunit (.1.2) AT5G11490 43 / 0.001 adaptin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031570 [exp] 1834 / 0 AT4G31480 1659 / 0.0 Coatomer, beta subunit (.1.2) Lus10015105 [exp] 1830 / 0 AT4G31480 1650 / 0.0 Coatomer, beta subunit (.1.2) Lus10027159 [exp] 1625 / 0 AT4G31480 1377 / 0.0 Coatomer, beta subunit (.1.2) Lus10027160 [exp] 256 / 1e-80 AT4G31490 237 / 3e-74 Coatomer, beta subunit (.1) Lus10028775 [exp] 74 / 5e-13 AT4G23460 1556 / 0.0 Adaptin family protein (.1) Lus10017508 [exp] 68 / 3e-11 AT4G23460 1565 / 0.0 Adaptin family protein (.1) Lus10032286 [exp] 67 / 5e-11 AT4G23460 1567 / 0.0 Adaptin family protein (.1) Lus10024654 [exp] 67 / 6e-11 AT4G23460 1560 / 0.0 Adaptin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G273300 [exp] 1738 / 0 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2) Potri.018G007400 [exp] 1737 / 0 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2) Potri.001G101400 [exp] 76 / 1e-13 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.003G130400 [exp] 69 / 1e-11 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.004G235200 [exp] 58 / 3e-08 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.016G104700 [exp] 50 / 1e-05 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.012G055000 [exp] 47 / 0.0001 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.015G045600 [exp] 45 / 0.0003 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region CL0159 [flax] [poplar] E-set PF07718 [flax] [poplar] Coatamer_beta_C Coatomer beta C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10039684 pacid=23165109 polypeptide=Lus10039684 locus=Lus10039684.g ID=Lus10039684.BGIv1.0 annot-version=v1.0 ATGGAGAAATCGTGTTCTCTACTGGTTCACTTCGACAAGGGATCGCCAGCGGTTGCGAATGAGATTAAGGAAGCTCTGGAAGGGAATGATGTTTCGGCCA AGATTGATGGCATGAAGAAGGCAATTAGCCTTCTGTTGAATGGTGAAAACTTGCCTCAGCTTTTCATCACTATTCTTAGATATGTACTGCCCTCTGAGGA TCACACCATACAGAAGCTGTTGCTGTTCTACTTGGAGATCATTGATAAGAAAGATGCTTCGGGGAAGCTTCTTCCGGAGATGATTTTGATATGCCAGAAT CTGATGAACAATCTTCAACACCCTAACGAGTACATCCGTGGGGTGACTTTGCGGTTTCTTTGCCGGATTCACGAGACAGAGATTATAGAGCCGTTAATCC CTTCGGTGCTGCAGAATCTGGAGCATAGGCACCCCTTTATTAGGAGGAATGCCATCTTTGCAGTGATGTCCATCTATAAGCTTCCCCAGGGCGACCAGCT GCTCATCGATGCTCCGGAAATGATCGAGAAGGCTCTTTCCTCAGAGCACGATCCTTCAGCCAAGCGCAATGCGTTCCTGATGCTTTTCACTTGTGCACAA GATCGAGCTATTAATTATCTTTTCAGCCACGTTGATAAGATCCCTGAATGGGATGAGAAGCTTCAGATGGTTGTTTTGGAGTTGATTCGTAAAGTTTGTA AAACAAGTAGGGGAGAGAAGGGAAGATACATCAAAATCATCATATCATTGTTGACTGCACCTTCGAGTGCTGTGGTTTACGAGTGTGCTGGAACTCTTGT TTCTCTTTCATCTGCTCCTACTGCCATTAAAGCTGCTGCTAACACATACGGGCAACTCCTTTTGTCTCAGAGTGATAACAATGTCAAGCTTATTGTGCTT GATCGCTTGCAAGAGCTAAAGTCTTCTCACAGGGAAATCATGGTCGAGATGGTTATGGACGTGCTTAGGGCACTCTCTAGCCCCAATCTTGATATACGCC GCAAGACCCTTGATATTGTTCTTGACTTGATCACTGCTAGGAATGTGAATGAAATTGTTCAGATGCTCAAGAAGGAAGTTGTTAAGACCCAGAGTGGAGA GCTTGAAAAGAATGGCGAGTACAGGCAGATGCTTATACAAGCCATCCATTTTTGTGCTATTAAGTTCCCGGAGGTGGCAAGCATAGTGGTTCACTTGTTG ATGGATTTCCTTGGAGATAGCAACATTGCTTCAGCTATTGATGTGGTTGTTTTTGTCCGGGAAATAATCGAAACCAACCCGAAACTCAGAGTTTCGATAG TAACAAGGCTGTTGGATACTTTCTATCAGATCCGAGCAGCCAGGGTATGCTCTGGTGCCCTTTGGATCATTGGGGAGTACTGCGTTTCCCTTTCTGAAGT AGAGAGTGGCATAGCAACAATCAAGCAGTGTCTTGGAGAATTGCCGTTTTTCTCTATTTCAGAAGAAGGTGAAGTTACTGATTCTTCCAAAAAGCCACCA CAACCGAGTTCCATCACAGTCTCTTCAAGAAAACCCGCTATCCTTTCTGATGGGACATATGCAACACAAAACGCTGCCTCTGAAACAGCATTTTCTCCGC CTACTGTAGTTCAAGGATCACTGTCCACTGGAAATTTGAGATCCCTTCTTCTCACTGGCGATTTTTTCCTTGGAGCAGTTGTTGCATGCACTCTAACAAA ACTGGTTCTGAGACTCGAAGAGGTGCAATCTTCTAAACTGGAGGTCAACAAGGCAGCCACACAGACTTTGTTGATAATGGTCTCCATGCTTCAATTGGGA CAGTCTTCTGTTCTGCCTCATCCAATTGACAGCGATTCATATGATAGGATCCTTCTGTGCATTAGGTTGCTATGTAATACTGGTGATGACATCCGGAAGA TATGGTTGCAATCATGCCGTCAAAGCTTTGTGAAAATGCTCTCAGAAAAGCAATTGAGGGAAACTGAGGAATTGAAGGCAAAGGCTCAGGTTTCTCATGC ACAACCAGATGATCTTATCGACTTCTATCATTTAAAGAGCAGGAAGGGTATGAGTCAGCTGGAGTTGGAAGATGAAGTACAAGATGATTTGAAGCGTGCA ACGGGAGAGTTCATCAACGATGGCAATGACGCTAATAAGCTCAACCGAATCCTTCAGCTCACTGGATTTAGTGACCCTGTGTATGCCGAAGCACATGTCA AGGTCAACCACTACGACATCGTACTTGATGTCACTGTCATCAACCGGACAAAGGAAACTCTCCAAAACTTGTGCCTGGAGTTGGCTACAATGGGCGATCT CAAGCTAGTTGAGCGTCCTCAGAATTATGCCTTGGCACCAGAATCAAGCAAACAGATAAAGGCCAACATCAAGGTCTCCTCAACTGAGACTGGCGTCATT TTCGGTAACATTGTTTTCGAGACATCCAATGTGATGGAACGTTCAGTTGTCGTCCTCAACGATATCCACATCGATATCATGGATTACATCTCTCCTGCTT CTTGCTCGGATGCTGCGTTCCGGACTATGTGGGCAGAATTTGAATGGGAAAATAAGGTTGCTGTTAACACAACAATTCAGAACGAGAAGGAATTCCTGGA CCATATCATCAAGTCTACAAATATGAAGTGTCTGACGGCACCGTCTGCACTTGATGGAGAGTGTGGATTCCTGGCTGCGAACTTGTACGCCAAGAGTGTG TTCGGCGAGGACGCATTGGTGAACATAAGCCTGGAGAAGGAAGGAGATGGAAAGCTCAGTGGATACATCAGGATTCGGAGCAAGACGCAAGGAATCGCGC TCAGCCTTGGTGATAAAATCACCTTGAAGCAGAAAGGTGGCAGTAGTTGA
AA sequence Show only first row Show all	>Lus10039684 pacid=23165109 polypeptide=Lus10039684 locus=Lus10039684.g ID=Lus10039684.BGIv1.0 annot-version=v1.0 MEKSCSLLVHFDKGSPAVANEIKEALEGNDVSAKIDGMKKAISLLLNGENLPQLFITILRYVLPSEDHTIQKLLLFYLEIIDKKDASGKLLPEMILICQN LMNNLQHPNEYIRGVTLRFLCRIHETEIIEPLIPSVLQNLEHRHPFIRRNAIFAVMSIYKLPQGDQLLIDAPEMIEKALSSEHDPSAKRNAFLMLFTCAQ DRAINYLFSHVDKIPEWDEKLQMVVLELIRKVCKTSRGEKGRYIKIIISLLTAPSSAVVYECAGTLVSLSSAPTAIKAAANTYGQLLLSQSDNNVKLIVL DRLQELKSSHREIMVEMVMDVLRALSSPNLDIRRKTLDIVLDLITARNVNEIVQMLKKEVVKTQSGELEKNGEYRQMLIQAIHFCAIKFPEVASIVVHLL MDFLGDSNIASAIDVVVFVREIIETNPKLRVSIVTRLLDTFYQIRAARVCSGALWIIGEYCVSLSEVESGIATIKQCLGELPFFSISEEGEVTDSSKKPP QPSSITVSSRKPAILSDGTYATQNAASETAFSPPTVVQGSLSTGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQSSKLEVNKAATQTLLIMVSMLQLG QSSVLPHPIDSDSYDRILLCIRLLCNTGDDIRKIWLQSCRQSFVKMLSEKQLRETEELKAKAQVSHAQPDDLIDFYHLKSRKGMSQLELEDEVQDDLKRA TGEFINDGNDANKLNRILQLTGFSDPVYAEAHVKVNHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYALAPESSKQIKANIKVSSTETGVI FGNIVFETSNVMERSVVVLNDIHIDIMDYISPASCSDAAFRTMWAEFEWENKVAVNTTIQNEKEFLDHIIKSTNMKCLTAPSALDGECGFLAANLYAKSV FGEDALVNISLEKEGDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10039684 [exp]	0	1
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10015105 [exp]	2.8	0.9447
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037525 [exp]	3.3	0.9500
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10039172 [exp]	7.5	0.9141
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10022850 [exp]	8.5	0.9097
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10034113 [exp]	8.9	0.9250
AT4G38200			SEC7-like guanine nucleotide e...		Lus10015863 [exp]	9.0	0.9280
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	9.2	0.9277
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10032067 [exp]	10.8	0.8675
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10003407 [exp]	10.9	0.9204
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10023580 [exp]	11.0	0.9160

Compare expression of checked genes

Lus10039684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.