Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77180 679 / 0 SKIP chromatin protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027157 [exp] 599 / 0 AT1G77180 541 / 0.0 chromatin protein family (.1.2.3) Lus10027158 [exp] 252 / 6e-81 AT1G77180 227 / 5e-72 chromatin protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086100 [exp] 737 / 0 AT1G77180 749 / 0.0 chromatin protein family (.1.2.3) Potri.006G163700 [exp] 737 / 0 AT1G77180 714 / 0.0 chromatin protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02731 [flax] [poplar] SKIP_SNW SKIP/SNW domain
Representative CDS sequence Show only first row Show all	>Lus10039685 pacid=23165203 polypeptide=Lus10039685 locus=Lus10039685.g ID=Lus10039685.BGIv1.0 annot-version=v1.0 ATGGCGGCGATGACTCCGTTGAAGGAGATACTACCTCCAGCCAAGTCAACAGTTTCGACCTACTACGACCACTCCAACGATCCATGGTTCAAGGAGAGGT TCAGCGCAGTCGAGGCCGAGAATTCCTCAGCGGCCGTGAAAGCCAAAGTTGTGCCTCCTTACTTGAAGCGTGAAAGTTTCGTTCCAAGAAAGGTCGATGA TTTCGGAGATGGCGGTGCTTTCCCTGAGATTCACATCGCTCAGTATCCTCTCGACATGGGGAGAAAAAACTCCGCCAAACCAGGATCGAAGATTCTTCCC GTTACTGTAGATGCTCATGGAGATGTCGCATATGATGCGATTGTGAGACAGAACGAGAACTCGAAGAAGATTGTGTATTCTCAGCTTAAGGATATCGTCC CCAAGATTCTGAAGAACGAGGAGCAAGTTGATGATGCCGACAAGAATGATGAGTTGATGAAGGAGCAGCAGACGGCGATGGAAACGCAAGCTGCGATTGA CAAGCGTGTCAACGTGGGACTGAGTGCAGCGCAGCCGAAGAATGTTCCTAAACATTCTTCGGAGTCGCAGTACATCAAGTACAAGCCGTCACAGCAATCT GCAGCGTTCAATTCCGGAGCGAAGGAGAGGGTTATTCGGATGGTGGAGATGCCTGTCGATCCTCTCGAGCCACCAAAGTTCAAGCACAAGAGGGTTCCTA GAGCTTCCGGATCTCCACCGGTTCCAGTAATGCATTCCCCTCCTAGACCCGTGACTGTGAAAGATCAGCAGGATTGGAAAATCCCGCCGTGTATTTCAAA CTGGAAGAATCCGAAAGGTTACACAATTCCACTCGATAAGCGTCTTGCAGCTGATGGAAGAGGGTTGCAGGATGTTCAGATCAACGATAATTTCGCCAAG CTGTCTGAATCGCTTTATGTAGCGGAGCAAAAGGCCAGAGAAGCTGTTGCTATGAGGTCTAAAGTTCAGAAGGAGATGATGATGAAGGAGAAGGAGAGGA AAGAACAGGAGTTGCGGGCTTTAGCTCAGAAGGCTCGAGCTGAAAGAACCGGCACTGCCGCTCCATCTTCGATGTCGATGCCAATGGATGACATGGACAC TCGAGGAGATTACGATACAGTACGAGATAGGCAGAAGGACACTCTTCCTCCTCCTCCTCCTCCGAAGGAATCAAGGGAGGAGAGAGAAGATCGAATCAAA AGAGAGAAGATTCGCGAGGAACGAAGAAGGGAGAGGGAGAGGGAGAGGAGATTGGAGGCGAAGGATGCTGCGATGGGGAAGAAGAGCAAGATTACTCGAG ATAGAGACCGTGACATCAGCGAGAAAGTGGCACTTGGGATGGCTTCTGCGGGGGCTGCGAAAGGAGGGGAGGTTATGTATGATCAGAGGCTGTTCAACCA AGAGAAAGGAATGGATTCGGGTTTCCAAACTGATGATCAGTACAATGTCTATGACAAGGGTTTGTTTACTGCTCAGCCGACTCTTTCGACTTTGTACAGG CCGAAGAAGGATGCAGATTCTGAGATGTACGGAGGTGCTGATGAGCAGATGGATAAGATTATGAAGACTGACCGGTTCAAACCAGATAAGGCGTTTACAG GTACGGCGGAGAGGGGTGGGGTTCAGAGAGATGGACCGGTTGAGTTTGAGAAGGAAGCTGAGGAGGCTGATCCGTTTGGTCTTGATCAGTTTTTGACTGA GGTGAAGAAGGGGAAGAAGGCTGATAGGGGTGGCGGAGGTACGATGAGGGCTAGTGGTGGTGGTTCTTCAAACCGAGATGATTATGGTGGTGGCTCTGGG AGGAGTCGCATCGGATTCGAGAGGGGCCATTAA
AA sequence Show only first row Show all	>Lus10039685 pacid=23165203 polypeptide=Lus10039685 locus=Lus10039685.g ID=Lus10039685.BGIv1.0 annot-version=v1.0 MAAMTPLKEILPPAKSTVSTYYDHSNDPWFKERFSAVEAENSSAAVKAKVVPPYLKRESFVPRKVDDFGDGGAFPEIHIAQYPLDMGRKNSAKPGSKILP VTVDAHGDVAYDAIVRQNENSKKIVYSQLKDIVPKILKNEEQVDDADKNDELMKEQQTAMETQAAIDKRVNVGLSAAQPKNVPKHSSESQYIKYKPSQQS AAFNSGAKERVIRMVEMPVDPLEPPKFKHKRVPRASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDNFAK LSESLYVAEQKAREAVAMRSKVQKEMMMKEKERKEQELRALAQKARAERTGTAAPSSMSMPMDDMDTRGDYDTVRDRQKDTLPPPPPPKESREEREDRIK REKIREERRRERERERRLEAKDAAMGKKSKITRDRDRDISEKVALGMASAGAAKGGEVMYDQRLFNQEKGMDSGFQTDDQYNVYDKGLFTAQPTLSTLYR PKKDADSEMYGGADEQMDKIMKTDRFKPDKAFTGTAERGGVQRDGPVEFEKEAEEADPFGLDQFLTEVKKGKKADRGGGGTMRASGGGSSNRDDYGGGSG RSRIGFERGH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10039685 [exp]	0	1
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10017584 [exp]	7.5	0.8101
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10004574 [exp]	8.1	0.8410
					Lus10035642 [exp]	11.7	0.8510
AT3G50880			DNA glycosylase superfamily pr...		Lus10041749 [exp]	12.0	0.8323
AT1G61620			phosphoinositide binding (.1)		Lus10018409 [exp]	12.0	0.8627
AT3G11810			unknown protein		Lus10037134 [exp]	17.6	0.8562
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10035641 [exp]	21.2	0.8397
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	22.0	0.8549
AT1G54310			S-adenosyl-L-methionine-depend...		Lus10001763 [exp]	23.3	0.7879
AT5G17380			Thiamine pyrophosphate depende...		Lus10009141 [exp]	27.2	0.8265

Compare expression of checked genes

Lus10039685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.