Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24220 302 / 5e-100 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G58750 209 / 3e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039689 [exp] 555 / 0 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039687 [exp] 505 / 1e-179 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018705 [exp] 300 / 4e-99 AT4G24220 590 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10032854 [exp] 296 / 1e-97 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018704 [exp] 273 / 7e-89 AT4G24220 530 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000076 [exp] 223 / 6e-71 AT4G24220 394 / 3e-138 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040675 [exp] 218 / 1e-67 AT5G58750 421 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039688 [exp] 207 / 1e-65 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10027156 [exp] 136 / 5e-39 AT4G24220 79 / 4e-18 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G030700 [exp] 530 / 0 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030600 [exp] 526 / 0 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030400 [exp] 483 / 7e-172 AT4G24220 249 / 6e-80 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 298 / 1e-98 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019400 [exp] 298 / 1e-98 AT4G24220 544 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019300 [exp] 290 / 2e-95 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019600 [exp] 290 / 2e-95 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019700 [exp] 290 / 2e-95 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120700 [exp] 289 / 4e-95 AT4G24220 569 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 288 / 9e-95 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10039686 pacid=23165316 polypeptide=Lus10039686 locus=Lus10039686.g ID=Lus10039686.BGIv1.0 annot-version=v1.0 ATGGACAATCCACCACCATCATCGCCACCAAACGTGGCCCTAATCGTCGGCGTAACGGGGATGGTCGGACTGAGCTTAGCCGAAGCTCTAAACAACCCAT CAACCAACGGCGGACCGTGGACGGTCTACGGCGTTGCCCGCCGTCAGTTACCAAATTGGTTCCCTGCTACTCTGCTCCACAAATTCATCGCCCTCGACGC CCTTGATCGCCAAGACACTCTGCAGAAACTCGCCCGTGTAGCTGGCGAAGTCACCCACGTCTTCTGGGTCGCTTTCCAGCTCCGCGAAGTTGAAGAAGTC AACATCGAGTTGAATTCCACCATGCTCTTTAATGTTCTTGACGCCGTCAAGTCTTCGGGGGAGAGTTGCCGTCTCAAGCATGTCACTCTCCAGACAGGGA CGAAGCAGTATATGGGACCGATTTATGATCCAGAGCATGGGTCGAAGTTGGTGATGCACGCGCCGCCGTTCAAGGAGGAGATGCCAAGGCTTCCGTATCC CAATTTCTACCACGCGCTGGAGGATGTGCTGGCGTCGGATTTGCCAGTCGGCGTTTCATTCTCGGTTCACCGGTCGTCGATCATAATGGGTGCTACGCCG AGAAGCATACACAATTTGTTGCTATCTCTGGCTGTTTACGCCACCATTTGCCGCTACAAAGGGCTCCCGTTCAGCTACCCGGGGAACAAGTACACATGGG AGCACTTTTGCGACATGTCGGATTCAAGGCTGCTAGCGGAGCAACAGATATGGGCGGGGACGACAGAGCGAGCCAAGAACCAAGCCTTCAATTGCACCAA TGGCGACATGTTCACCTGGAGAGTAGTGTGGAAGCTAATGTGCGAGCTTTTCGATGTGGAGTTTGTGGAACTCGAAGATGGTGAGGAGAAGTTCGACGTG ATTGGGATGTTGAAAGGGATGGGGAAAGTGTGGGAGGAGATTGTTGAGAAACATGGATTGGTGGAGACTAAGTTGGAGGAAGTGAATTGCTTTGATGCGA TAACGGTGGTTAGCAATTTCAAGTTTCAGCACGTTTGTAGCATGAACAAGAGCCGGGAGTTTGGGTTTGTGGGGTCTTACGACACGATGAAGAGCATTCG GTACTGGATTGGGAGGATGAGAGAGATGAAGATCGTACCCTAG
AA sequence Show only first row Show all	>Lus10039686 pacid=23165316 polypeptide=Lus10039686 locus=Lus10039686.g ID=Lus10039686.BGIv1.0 annot-version=v1.0 MDNPPPSSPPNVALIVGVTGMVGLSLAEALNNPSTNGGPWTVYGVARRQLPNWFPATLLHKFIALDALDRQDTLQKLARVAGEVTHVFWVAFQLREVEEV NIELNSTMLFNVLDAVKSSGESCRLKHVTLQTGTKQYMGPIYDPEHGSKLVMHAPPFKEEMPRLPYPNFYHALEDVLASDLPVGVSFSVHRSSIIMGATP RSIHNLLLSLAVYATICRYKGLPFSYPGNKYTWEHFCDMSDSRLLAEQQIWAGTTERAKNQAFNCTNGDMFTWRVVWKLMCELFDVEFVELEDGEEKFDV IGMLKGMGKVWEEIVEKHGLVETKLEEVNCFDAITVVSNFKFQHVCSMNKSREFGFVGSYDTMKSIRYWIGRMREMKIVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039686 [exp]	0	1
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10033327 [exp]	2.2	0.9386
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10034786 [exp]	3.9	0.9311
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006557 [exp]	4.9	0.9239
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10038088 [exp]	5.2	0.9175
AT1G24130			Transducin/WD40 repeat-like su...		Lus10029206 [exp]	6.0	0.9137
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	8.4	0.9355
AT1G78990			HXXXD-type acyl-transferase fa...		Lus10000557 [exp]	8.7	0.9108
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10017442 [exp]	8.7	0.9281
AT5G36930			Disease resistance protein (TI...		Lus10006928 [exp]	10.5	0.9148
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10037753 [exp]	11.4	0.8952

Compare expression of checked genes

Lus10039686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.