Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24220 245 / 1e-77 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G58750 171 / 2e-49 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039689 [exp] 514 / 0 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039686 [exp] 461 / 3e-162 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10032854 [exp] 230 / 9e-72 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018705 [exp] 226 / 3e-70 AT4G24220 590 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018704 [exp] 225 / 8e-70 AT4G24220 530 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039688 [exp] 184 / 2e-56 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10027156 [exp] 174 / 1e-53 AT4G24220 79 / 4e-18 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000076 [exp] 165 / 4e-48 AT4G24220 394 / 3e-138 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040675 [exp] 161 / 2e-45 AT5G58750 421 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G030600 [exp] 412 / 4e-143 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030700 [exp] 403 / 1e-139 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030400 [exp] 358 / 2e-122 AT4G24220 249 / 6e-80 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019400 [exp] 240 / 1e-75 AT4G24220 544 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 239 / 1e-75 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 239 / 2e-75 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120600 [exp] 235 / 9e-74 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019600 [exp] 233 / 8e-73 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019300 [exp] 231 / 4e-72 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019700 [exp] 226 / 3e-70 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039687 pacid=23165377 polypeptide=Lus10039687 locus=Lus10039687.g ID=Lus10039687.BGIv1.0 annot-version=v1.0 ATGTCAATGCTGACCGTCGTCGAAGACCGGAATCCCTCCTCCGTTGCCCTAATCGTGGGCGTAACGGGGATGGTCGGGCTGAGCCTCGCCGAAGCTCTGA ACGACCCGTCAACTCCGGGCAGTCCGTGGAAAGTGTACGGAGTAGCACGTCGTGCATTACCCACTTGGTTCCCTGCTCCTCTGCTCCAAAAATTCATCTC CATGGATGCTCTGGATCAACAGGACACGTTAGAAAAGCTGTCCCCTGTGGCTAGTGAAGTTACGCATGTGTTCTGGGTTGCCTTAATGATGCGTGAAAGT GAAGAGATGAACATCTCCATGAATTCGTCCATGATTTCTCACGTTATCGAGGCTTTGAAATCGGCCGGAGAGAGTTCGCCGCTCAGGCACTTCGCTCTTC AAACAGGTAATGAAATATTCATAATTCAGAGTTTGGGTAAAGTCTCTGTGAAATCTAAATCGTACGAAACACTATATGGGTCCAATCCTCGATCCCGAAC ACAGCTCGAAGTGATGCACGCCCCGCCGTGGCACGAAGACATGCCAAGGCTACCATACCCAAACTTCTACTACGCACAAGAGGACGTCCTGGCATCAACC TTACCAAAGGGAGTCACACACTCGATACACAGAGCATCAGTCATATGCGGCGCAACGCCAAGAAGCCTCTACAATGGACTTCTAACCCTATCGATTTACG CTACCATTTGCAAGTACAAATCCCTCCCGTTCAGATACTACGGAGGCAAGTACGCGTGGGACCACTTCCGCGATATGTCTGATTCGAGGCTTCTGGCCGA GCAACAAATATGGGCTGCCACGGCTGAGGAGGCGAGGAACCACGTGTTCAATTGTACCAACGGGGACATATTCACGGGGAAGGAGTTGTGGATGGTGCTC TGTCGGGAGTTCGAGTTGGAGTTCAACGAGGACATGGAGGAATTCGAGTTCGATGTGGTAGGGATGGGAGATGTGTGGGATGAGATTGTGGACAAGCATG GGCTGGTGAAGACTCAGTTGGAAGAGGTTACTTGTTTTGATTTGTTGGTGGTGAGTGGGAATTTCGAGTACCAGACCGTTTGTAGCATGAACAAGAGTAG GGAGTTCGGGTTTATGGGCTTTTACAATACGATAAAGAGCGTTCCTTACTGGGTTGGGAGGATGAGGGAGATGAAGATCATACCTTAG
AA sequence Show only first row Show all	>Lus10039687 pacid=23165377 polypeptide=Lus10039687 locus=Lus10039687.g ID=Lus10039687.BGIv1.0 annot-version=v1.0 MSMLTVVEDRNPSSVALIVGVTGMVGLSLAEALNDPSTPGSPWKVYGVARRALPTWFPAPLLQKFISMDALDQQDTLEKLSPVASEVTHVFWVALMMRES EEMNISMNSSMISHVIEALKSAGESSPLRHFALQTGNEIFIIQSLGKVSVKSKSYETLYGSNPRSRTQLEVMHAPPWHEDMPRLPYPNFYYAQEDVLAST LPKGVTHSIHRASVICGATPRSLYNGLLTLSIYATICKYKSLPFRYYGGKYAWDHFRDMSDSRLLAEQQIWAATAEEARNHVFNCTNGDIFTGKELWMVL CREFELEFNEDMEEFEFDVVGMGDVWDEIVDKHGLVKTQLEEVTCFDLLVVSGNFEYQTVCSMNKSREFGFMGFYNTIKSVPYWVGRMREMKIIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039687 [exp]	0	1
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	6.8	0.9262
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10001217 [exp]	8.7	0.9219
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Lus10020901 [exp]	10.5	0.8915
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10032165 [exp]	11.8	0.9013
AT1G26090			P-loop containing nucleoside t...		Lus10034265 [exp]	15.3	0.8857
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10007111 [exp]	16.0	0.9091
AT5G54600			Translation protein SH3-like f...		Lus10038125 [exp]	18.8	0.9091
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	21.3	0.8890
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	25.3	0.9018
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	30.6	0.9013

Compare expression of checked genes

Lus10039687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.