Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24220 296 / 1e-97 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G58750 201 / 5e-61 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039687 [exp] 547 / 0 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039686 [exp] 532 / 0 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10032854 [exp] 271 / 6e-88 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018705 [exp] 263 / 1e-84 AT4G24220 590 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018704 [exp] 251 / 4e-80 AT4G24220 530 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039688 [exp] 211 / 1e-66 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040675 [exp] 191 / 4e-57 AT5G58750 421 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10000076 [exp] 187 / 9e-57 AT4G24220 394 / 3e-138 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10027156 [exp] 140 / 1e-40 AT4G24220 79 / 4e-18 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G030600 [exp] 495 / 3e-176 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030700 [exp] 492 / 7e-175 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030400 [exp] 453 / 1e-159 AT4G24220 249 / 6e-80 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 281 / 1e-91 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120600 [exp] 279 / 4e-91 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019600 [exp] 276 / 5e-90 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019700 [exp] 276 / 6e-90 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120700 [exp] 274 / 4e-89 AT4G24220 569 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 272 / 2e-88 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019300 [exp] 271 / 6e-88 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039689 pacid=23165045 polypeptide=Lus10039689 locus=Lus10039689.g ID=Lus10039689.BGIv1.0 annot-version=v1.0 ATGGAAACCGCCTCCACCGCCGTCGACGACCAGAATCCCTCCTCCGTCGCCTTGATCGTCGGCGTAACGGGGATGGTCGGACTGAGCCTCACCGAAGCAC TAAACGACCCGTCAGCTCCGGGCGGTCCGTGGAAAGTGTACGGAGTAGCTCGTCGTTCGTTGCCAACTTGGTGCCCTGCTTCTCTGCTCCATGGATTCAT CTCCATGGATGCTCTGGATCAGCAAGACACGTTAACGAAGCTTTCCCCTGTGGCCAGTGAAATTACTCATGTGTTCTGGGTAGCTTTAGTGGTGAAGGAA AGCGAAGAGGAGAATATTGCCATGAATTCATCCATGATCTCTCATGTCATCGAGGCTTTGAAATCGGCCGGGGAGAAGTCGAGGCTCAAGCATTTCGCCC TTCAAACGGGTACGAAACACTACATGGGTCCGATCTACGATCCCGAACACAGGTCCAAGATCGTGATGCACGACACGCCATTTCGCGAAGACATGCCAAG GCTACCGTACCCGAACTTCTACTACGCACAAGAGGACATCTTGGCATCAACCTTACCAAAGGGAGTCACACATTCGATCCACAGATCATCCATCATAATG GGAGCATCACCCAGAAGCCTCTTCAACACCTTGCTCTCCCTGTCGGTCTACGCCACCATTTGCAAGTACAAATCGCTCCCGTTCAGGTACTTTGGGAGCA AGTACACGTGGGAACACTTTTGCGACTTTTCCGACTCCAGTCTACTGGCGGAGCAGCAGATATGGGCTGCGACGACCGAGGAGGCTAAGAACCAGGCGTT CAACTGTACCAACGGGGATGTCGTTACGTGGAAGGAGGTTTGGAGGGTTTTATGTCAGGTTTTCGAGTTGGAGTTCGACGAGAACGAGGAAGGAGAGTTC GATGTGAGTGGGATGATGAAGGGTGGGATCATGGGAGATGTTTGGGATGAAATTGTGGAGAAGTATGGGTTGGTGAAGACTAAGCGGCCTTATGTTACTT GCTTCGATGCGTTTGCGACGGTTATGCATTTCGAGTTCCAGCATGTTTGTAGTATGAACAAGAGCAGGGAGTTTGGGTTCATGAGTTACTGCAACTCTTT GAAGAGCATTCCTTTCTGGGTTAACAGAATGAGAGATATGAAGATTATACCTTGA
AA sequence Show only first row Show all	>Lus10039689 pacid=23165045 polypeptide=Lus10039689 locus=Lus10039689.g ID=Lus10039689.BGIv1.0 annot-version=v1.0 METASTAVDDQNPSSVALIVGVTGMVGLSLTEALNDPSAPGGPWKVYGVARRSLPTWCPASLLHGFISMDALDQQDTLTKLSPVASEITHVFWVALVVKE SEEENIAMNSSMISHVIEALKSAGEKSRLKHFALQTGTKHYMGPIYDPEHRSKIVMHDTPFREDMPRLPYPNFYYAQEDILASTLPKGVTHSIHRSSIIM GASPRSLFNTLLSLSVYATICKYKSLPFRYFGSKYTWEHFCDFSDSSLLAEQQIWAATTEEAKNQAFNCTNGDVVTWKEVWRVLCQVFELEFDENEEGEF DVSGMMKGGIMGDVWDEIVEKYGLVKTKRPYVTCFDAFATVMHFEFQHVCSMNKSREFGFMSYCNSLKSIPFWVNRMRDMKIIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039689 [exp]	0	1
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	4.8	0.9627
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024246 [exp]	8.4	0.9439
AT2G26230			uricase / urate oxidase / nodu...		Lus10028868 [exp]	8.8	0.9482
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	9.1	0.9492
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	11.0	0.9469
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	11.8	0.9395
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Lus10040601 [exp]	12.8	0.9109
AT3G51660			Tautomerase/MIF superfamily pr...		Lus10000344 [exp]	20.8	0.9338
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021023 [exp]	21.8	0.9362
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	21.9	0.9439

Compare expression of checked genes

Lus10039689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.