Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21865 286 / 4e-97 PEX22 peroxin 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027155 [exp] 351 / 1e-119 AT3G21865 310 / 6e-103 peroxin 22 (.1) Lus10015100 [exp] 331 / 2e-114 AT3G21865 319 / 1e-109 peroxin 22 (.1) Lus10031575 [exp] 295 / 1e-94 AT5G35730 597 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121600 [exp] 308 / 1e-105 AT3G21865 322 / 4e-111 peroxin 22 (.1) Potri.017G038800 [exp] 308 / 1e-105 AT3G21865 320 / 2e-110 peroxin 22 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039690 pacid=23165343 polypeptide=Lus10039690 locus=Lus10039690.g ID=Lus10039690.BGIv1.0 annot-version=v1.0 ATGGCTGAGTCATCGAAGGAAGAGCTCTTGCAGCTGATCAAGAGGTTCGGAGCTTATTTGAGCGTCAAGATGTCGACTTTCCTCCCGATCTCACTCCGTA ATCTGGATCCAAGGTCTGCTGGGGCCATAGCAGGACTTGCACTGGCAGTGGTTTTCACTTGGAGAATGTTGAGATCACCTAGTGCTCCACCGAGAAGGCA ACCACCGAAAAGAGATAATCCTTCAACTAGTACTTCTTCTGCTAACAGAGAAACAAATGCGGCATCTGTTGCCTCTGGAGCTTCATCTTCAGAGGATTTG AGAGCTCAAAATGTTGTAAATGAGTTCTTCCAGCCTGTTAAACCAACTTTGGGGCAAGTAGTGAGACAAAAGTTGAGTGAAGGCAGAAAGGTCACTTGCC GTTTAGTTGGGGTGATTCTTGAAGAAAGCACTCCAGAAGAGCTTCAGAAACAAGCAACAGTGAAATCCTCTGTTCTGGAAGTATTGTTGGAGGTCACCAA ATTTTGTGATCTTTACCTGATGGAAAGAGTTCTTGATGATGAAACTGAACAAAGAGTACTTGCTGCCTTAGAGAGCGCAGGAGTTTTCACCTCTGGTGGT TTGGTCAAAGACAAGGTTCTCTTCTGTAGCACAGAAACTGGGCGCACATCTTTCGTTCGGCAGCTCGAACCAGACTGGCATATCGACAGCAGTCCCGAAA TTGTCACTCAATTAGCTAGGTTTATCAAGTATCAACTCCATATCTCTCCTACAAAGCTTGAACGGTCACCTGGAAACGTCGTCCACTCTCCGTCACTGGA ACACTTCTTCGGATTAGTATGA
AA sequence Show only first row Show all	>Lus10039690 pacid=23165343 polypeptide=Lus10039690 locus=Lus10039690.g ID=Lus10039690.BGIv1.0 annot-version=v1.0 MAESSKEELLQLIKRFGAYLSVKMSTFLPISLRNLDPRSAGAIAGLALAVVFTWRMLRSPSAPPRRQPPKRDNPSTSTSSANRETNAASVASGASSSEDL RAQNVVNEFFQPVKPTLGQVVRQKLSEGRKVTCRLVGVILEESTPEELQKQATVKSSVLEVLLEVTKFCDLYLMERVLDDETEQRVLAALESAGVFTSGG LVKDKVLFCSTETGRTSFVRQLEPDWHIDSSPEIVTQLARFIKYQLHISPTKLERSPGNVVHSPSLEHFFGLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21865		PEX22	peroxin 22 (.1)		Lus10039690 [exp]	0	1
AT4G08240			unknown protein		Lus10009881 [exp]	1.0	0.9382
AT5G55530			Calcium-dependent lipid-bindin...		Lus10016592 [exp]	4.6	0.9289
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10025933 [exp]	6.3	0.9081
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	8.9	0.9069
AT3G51100			unknown protein		Lus10041813 [exp]	11.7	0.8949
AT3G07580			unknown protein		Lus10016076 [exp]	14.3	0.9322
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10016651 [exp]	14.8	0.9159
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10008421 [exp]	15.7	0.8907
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	16.9	0.8949
AT3G51100			unknown protein		Lus10028362 [exp]	21.0	0.8876

Compare expression of checked genes

Lus10039690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.