Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05280 473 / 6e-165 Protein of unknown function (DUF604) (.1) AT4G15240 409 / 2e-139 Protein of unknown function (DUF604) (.1) AT5G41460 370 / 1e-123 Protein of unknown function (DUF604) (.1) AT1G01570 355 / 9e-119 Protein of unknown function (DUF604) (.1) AT4G11350 357 / 1e-118 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT4G23490 354 / 2e-117 Protein of unknown function (DUF604) (.1) AT2G37730 332 / 1e-108 Protein of unknown function (DUF604) (.1) AT4G00300 336 / 1e-107 fringe-related protein (.1.2) AT1G07850 319 / 1e-103 Protein of unknown function (DUF604) (.1) AT3G11420 310 / 2e-100 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027153 [exp] 784 / 0 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10039693 [exp] 387 / 1e-131 AT4G15240 495 / 1e-173 Protein of unknown function (DUF604) (.1) Lus10027152 [exp] 363 / 1e-121 AT4G15240 521 / 0.0 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 350 / 4e-116 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 350 / 5e-116 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 349 / 2e-115 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 318 / 3e-103 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10002713 [exp] 305 / 4e-99 AT3G11420 460 / 5e-159 Protein of unknown function (DUF604) (.1) Lus10008293 [exp] 305 / 3e-98 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G039600 [exp] 587 / 0 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.017G039500 [exp] 386 / 3e-130 AT4G15240 491 / 9e-171 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 365 / 9e-122 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 363 / 2e-121 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 358 / 1e-119 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 337 / 2e-111 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 329 / 5e-108 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 327 / 2e-107 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 314 / 3e-102 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 306 / 3e-99 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10039692 pacid=23165110 polypeptide=Lus10039692 locus=Lus10039692.g ID=Lus10039692.BGIv1.0 annot-version=v1.0 ATGCAGTTGTTTCGTTCATCAACGTCTTGTTCTTCTAAGTCCAGTTGTTCCACACGTTTAATAACCTTCGTCATTTTCTCATCGTCTATTTTCATTGTCT ATCTTCTGGTGTCAGTGTTCCTGGTTGGTTCTTCCAGCTTCACAGGTGTGACTTCTTCCTGGGAAGGAATTGCTGGTGGTTCATCATCATCATCCTTTCC ACAGTCAGCGACGAAGCTCGAGCACATTGTCTTCGGGATAGCCTCCAACAAGAAATCGTGGCTGAACCGGAAGGAGTATGTCAAGCTCTGGTGGAAGCCT CAGCAGATGAAGGGATGTGTATTCCTCGAGACTCCGCTCGATGATCATGACCGAAACTTTAGCGCTGATAACTCTTCCCTGCCTCCTGTCTGCATCTCTG AGGACACCTCGAGGTTTCGGTACACGTTCAAGAAAGGTCTCAGGTCTGCTATTCGAGTTGCTAGGGTGGTCTCCGAGACGGTGGCACTCAACCATACTGA TGTCAGGTGGTTTGTGTTTGGGGACGATGACACGGTTTTCTTCCCGGAGAACTTGGTGAAGACTCTATCGAAATACGATCATAGGCTTTGGTACTACATT GGGTCTAACTCGGAGATTTATGAGCAGAACAGGCTGTTTGGTTTTGACATGGCTTATGGCGGAGCAGGATTCGCAATAAGCTACCCACTGGCTAAAGTTT TGGCCAAGGTTCTTGATTCTTGTATAGAAAGGTATCATCATCTCTATGGAAGTGATTCTAGAGTGTCTTCTTGCTTGGTTGAGCTTGGTGTAACATTAAC TAAAGAGCCCGGTTTCCATCAGCTCGATTTTCATGGTGATGTGTTTGGTCTATTGACTTCACACCCAACCGTGCTAGTAGTGTCTCTCCACCACATGGGT CACATAGGTCCGATCTTCCCCAACATGACGACTCGAGATTCTGTTCAACATTTGCTGACCGCAGCAGATGTCGATTCACAGAGGGTCCTGCAGAAGACCG TCTGCTACGACCGTTGGTTCTCATGGACCATATCAGTGGCGTGGGGGTACGCAGTCGAGGTCTACGGGAGCCACATTCTCCTCCCCGACGTACTCCCTAC CGAAACGACATTCAAGCAATGGAGCAAAGGAAGTGTGCTTGCCGGAACATATGTTTTCAACACTCGACCGCCTCATCCCGATCCATGCAAGAGAGCCACG GTTTTCTTTATGGACCGTGCCTCCACTTCTTCTAACGGAAAAAGCAATATCGTTACCAGCCACTACACGAAAGCCTACGCGAATTGCTCGGAGGACTTGG CATCACCCAGAAGACTTGAAGAGATAAAGGTGTTCTCTCGCAAGCTTGACCTCAGCGATGCGCAGGTAGAATAG
AA sequence Show only first row Show all	>Lus10039692 pacid=23165110 polypeptide=Lus10039692 locus=Lus10039692.g ID=Lus10039692.BGIv1.0 annot-version=v1.0 MQLFRSSTSCSSKSSCSTRLITFVIFSSSIFIVYLLVSVFLVGSSSFTGVTSSWEGIAGGSSSSSFPQSATKLEHIVFGIASNKKSWLNRKEYVKLWWKP QQMKGCVFLETPLDDHDRNFSADNSSLPPVCISEDTSRFRYTFKKGLRSAIRVARVVSETVALNHTDVRWFVFGDDDTVFFPENLVKTLSKYDHRLWYYI GSNSEIYEQNRLFGFDMAYGGAGFAISYPLAKVLAKVLDSCIERYHHLYGSDSRVSSCLVELGVTLTKEPGFHQLDFHGDVFGLLTSHPTVLVVSLHHMG HIGPIFPNMTTRDSVQHLLTAADVDSQRVLQKTVCYDRWFSWTISVAWGYAVEVYGSHILLPDVLPTETTFKQWSKGSVLAGTYVFNTRPPHPDPCKRAT VFFMDRASTSSNGKSNIVTSHYTKAYANCSEDLASPRRLEEIKVFSRKLDLSDAQVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05280			Protein of unknown function (D...		Lus10039692 [exp]	0	1
AT1G51940			protein kinase family protein ...		Lus10026689 [exp]	45.2	0.5733
AT5G16890			Exostosin family protein (.1)		Lus10013787 [exp]	53.5	0.5769
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10008701 [exp]	85.9	0.5438
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10042747 [exp]	146.9	0.5338

Compare expression of checked genes

Lus10039692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.