Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15240 390 / 3e-132 Protein of unknown function (DUF604) (.1) AT1G05280 292 / 2e-94 Protein of unknown function (DUF604) (.1) AT5G41460 252 / 2e-78 Protein of unknown function (DUF604) (.1) AT4G11350 246 / 3e-76 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT4G23490 246 / 4e-76 Protein of unknown function (DUF604) (.1) AT2G37730 242 / 2e-74 Protein of unknown function (DUF604) (.1) AT1G07850 238 / 5e-73 Protein of unknown function (DUF604) (.1) AT1G01570 237 / 5e-73 Protein of unknown function (DUF604) (.1) AT1G33250 219 / 1e-65 Protein of unknown function (DUF604) (.1) AT3G11420 211 / 4e-63 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027152 [exp] 695 / 0 AT4G15240 521 / 0.0 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 320 / 7e-105 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 318 / 2e-104 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 257 / 3e-80 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10032293 [exp] 244 / 2e-75 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 244 / 4e-75 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 234 / 3e-71 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10008293 [exp] 221 / 3e-66 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1) Lus10009957 [exp] 209 / 2e-62 AT5G12460 439 / 3e-151 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G039500 [exp] 456 / 3e-158 AT4G15240 491 / 9e-171 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 338 / 2e-112 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 247 / 2e-76 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 245 / 1e-75 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 244 / 1e-75 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 241 / 3e-74 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 238 / 3e-73 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 233 / 1e-71 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G256200 [exp] 226 / 1e-68 AT5G12460 444 / 2e-153 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 226 / 2e-68 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10039693 pacid=23165002 polypeptide=Lus10039693 locus=Lus10039693.g ID=Lus10039693.BGIv1.0 annot-version=v1.0 ATGCCGCCGATCAGGAACCTCACCCTGACTCCTACTCGCCTGAAGGACATCATCCTCCTCTTCTCCCTCCTCGGCATAGTCCACCTCACATTCCGCAACC CTCCTCCCCAACCTCCGTCGCACCCCTCCGATTTCGCCACCTCCGTCGTCCCCACTGCTCGCCGCCACATCCTCTTCTCCATCGCGTCTTCAGAAGGCTC CTTCCTCCGCCGTAAGCCTTACATTCGCCTCTGGTACGAGCCCAACGCCACCCGCGCCTTCGCTTTCCTGGACTCGCACCTGCCCAATGACGACGACGAC GACCTCGCATCCGATCTCCCTCCCGTGATCGTCTCCGAGGACACCTCCCGGTTCCCCTACACCTTCAAGGGCGGGCTGAGGTCCGCGATCCGCGTGGCGC GGGTGGTGAAGGAGGCGGTGGAGCTGAACCAGACCGGAGTGCGGTGGTTCGTGTTTGGGGATGATGATACGGTGTTTTTCGTGGATAATTTGATCGATAC GCTGTCGAAGTACGATCATACGCGGTGGATTTACATTGGGAGTAATTCCGAGAGCTATGGGCAGAATTTGAACTATGCGTTTGGTATGGGGTTTGGTGGA GGTGGATTCGCCATCAGTTATCCGTTGGCGAGGGCTTTGGCTAGGGTTCTGGATTCCTGTTTGGTTCGTTACTCGCATTTATACGGCAGTGATGCTAGGA TCTTCTCCTGCTTGGCTGAATTAGGCGTTGGATTGACTCACGAGCCTGGCTTCCACCAGGTTGACTTGCGAGGGAATTTGTTTGGCTTTCTTTCAGCTCA TCCATTATCGCCATTGGTATCTCTTCATCATTTGGATGCTGCAAACCCACTGTTCCCCACCATGAACAGAACTGAAGCTATGGAACATCTTTTCAAGGCT GTGAGTGTTGATCCCGCTAGGATCTTGCAGCAGGTCGTATGTTATGACCAAGCCAATTCCTTTACTGTGTCGATTGCATGGGGATACTCGATTCAGGTGT TTGAGGGGAACGAGCTTCTTCCGGAACTCCTTAAGCTGCATGAAACCTTCGCCCCATGGAGAAGACATCGAAATGCAATCGCTAAATATTACATGTTTAA TATGAGAGACTATCCTAGAGATCCATGTAAAAGGCCAGCTGTTTTCTTTATGCAAAATGTTGTATCCAGTGAAGATGGCATTCGGAGCAGTTACATTAGG CACAATGTTGAGGATTGCACAACGGCTTCTAGAGCTATGAAAAATCTGAAGTACATCAAGGTGTGGTCAGAAAAACTAAAGCTTGATGTCGATCAGGTAT GA
AA sequence Show only first row Show all	>Lus10039693 pacid=23165002 polypeptide=Lus10039693 locus=Lus10039693.g ID=Lus10039693.BGIv1.0 annot-version=v1.0 MPPIRNLTLTPTRLKDIILLFSLLGIVHLTFRNPPPQPPSHPSDFATSVVPTARRHILFSIASSEGSFLRRKPYIRLWYEPNATRAFAFLDSHLPNDDDD DLASDLPPVIVSEDTSRFPYTFKGGLRSAIRVARVVKEAVELNQTGVRWFVFGDDDTVFFVDNLIDTLSKYDHTRWIYIGSNSESYGQNLNYAFGMGFGG GGFAISYPLARALARVLDSCLVRYSHLYGSDARIFSCLAELGVGLTHEPGFHQVDLRGNLFGFLSAHPLSPLVSLHHLDAANPLFPTMNRTEAMEHLFKA VSVDPARILQQVVCYDQANSFTVSIAWGYSIQVFEGNELLPELLKLHETFAPWRRHRNAIAKYYMFNMRDYPRDPCKRPAVFFMQNVVSSEDGIRSSYIR HNVEDCTTASRAMKNLKYIKVWSEKLKLDVDQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15240			Protein of unknown function (D...		Lus10039693 [exp]	0	1
AT4G01290			unknown protein		Lus10036389 [exp]	1.0	0.8293
AT4G26450		WIP1	unknown protein		Lus10008342 [exp]	9.5	0.8164
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	11.2	0.7898
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10008288 [exp]	16.0	0.7849
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	16.9	0.8040
AT5G20610			unknown protein		Lus10017162 [exp]	17.7	0.7934
AT3G51050			FG-GAP repeat-containing prote...		Lus10025977 [exp]	20.1	0.7490
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10040782 [exp]	27.3	0.7444
AT4G26450		WIP1	unknown protein		Lus10027096 [exp]	27.4	0.7959
AT2G40480			Plant protein of unknown funct...		Lus10029055 [exp]	27.8	0.7445

Compare expression of checked genes

Lus10039693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.