Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21880 207 / 3e-63 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT4G15250 176 / 8e-52 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT2G33500 133 / 7e-35 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT3G07650 100 / 5e-23 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT5G48250 98 / 2e-22 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT1G68190 92 / 2e-20 CO B-box zinc finger family protein (.1) AT1G28050 82 / 8e-17 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT2G47890 77 / 2e-15 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT3G02380 65 / 2e-11 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G15840 64 / 2e-11 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031584 [exp] 266 / 1e-84 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10015098 [exp] 259 / 4e-83 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10036419 [exp] 121 / 1e-30 AT5G48250 332 / 8e-112 B-box type zinc finger protein with CCT domain (.1) Lus10041096 [exp] 103 / 1e-24 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10027150 [exp] 90 / 3e-22 ND / Lus10002578 [exp] 79 / 1e-15 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10035257 [exp] 78 / 2e-15 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10001806 [exp] 76 / 2e-14 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10040900 [exp] 74 / 2e-14 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G039301 [exp] 262 / 1e-83 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1) Potri.007G121200 [exp] 256 / 3e-81 AT3G21880 291 / 1e-95 B-box type zinc finger protein with CCT domain (.1) Potri.014G170600 [exp] 100 / 3e-23 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.002G214500 [exp] 97 / 5e-22 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.008G125200 [exp] 95 / 5e-21 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.001G061800 [exp] 84 / 3e-17 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 76 / 1e-14 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.014G134601 [exp] 74 / 1e-14 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.004G108320 [exp] 71 / 2e-13 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1) Potri.001G323500 [exp] 71 / 4e-13 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10039695 pacid=23165251 polypeptide=Lus10039695 locus=Lus10039695.g ID=Lus10039695.BGIv1.0 annot-version=v1.0 ATGGAACCCTTTTGCGACTTGTGCTGTGTGATGAAGGCAGCGGTTTACTGCAAATCAGACACGGCGAGGCTGTGCCTGGACTGCGACGCGCGTGTGCATT CCGCGAATTCGCTGGCTCGCAGGCATCAGCGTTCGATCCTCTGCAGTAAGTGCGATTCCGACCCTGCGGTGCTCCGATGCCTGGACGAGAACAATCTCCC TGTGTGTCAAGGGTGCGAGCTCTGGTGCATAAGCTCGGGGCACAAGCTACACGTTTCTAGTAATTGTTACGTTGGTTGTCCTTCGTGGTCGGAGATCTTG GGGCGATGGTCTGGTGGTGGTGGTGATCTTCTTGATCAGTTCCCTTCTTTTGGTGGTGTTGGATGTGATCCGAGTTTGATCAGGCAGCATCTCAATTATC CTTTGCCAACGATTAATGATCTCAATTCGGGTTCGAGGTTCCAGCCTAATTTGTTGGTGCCCTTCATGTCAGAAGGATCAAAGGATTGCTCGAATCTTAA AGACATTTGTATCGACGGTCTCAACATATTGGACGATGTCCAGCTGAATTTCGAACACGGTGATGGTGGGATATTCGAATGCCTGCAGGATCAGGTCGTG AATAACAACACGTTTGAAGATGTCGAAAACCAGTGTTGCAATACGATCGAAAGGAACTTGTCGTTTACTGAATCAAACGGTCCGATTGAGGGTTCATCAC CGGGGCAGCAGGAATGTGCAGCGTTGAATATTCAGCCATCTCATGTTGCTTCCAGGTCAAGTAACTGCTTCTACATGAACCCTAATGGCAACAGAGCCAA CAACAGCATGAATGTGCAAGGGTTTACTACTGGTGAGACTCATGGAGGACAGCAACAAGTTCATTCATCAGCCATGTCGATCTCGTTTTCGACCAACATC AGTGGAGAAATCAGCAGTGATTACCAAGATTGTGGGCTATCATCATCAAAAGCATTTCTGAGTGGCACCACTGAATCACCTCCATGGGAGGCCACCTTGG AAGCTAGCAGCAGCCCACACACCAGGCACCAGGCGAAGCTACGATACAACGAGAAGAAGAAGACACGAAGGTTTGGGAAGCAGATTCGATATGCCTCTCG CAAAGCGAGGGCTGAAACGAGGAAGCGCGTGAAAGGAAGATTCGTGAAAGCTGGCGAAGAATGCGACTATGATCCTTCTTCCGATGAGCGGTTACTTGTG GAAGAAGACACCAAAGTCGTCCCATCATCCATGGCTTGA
AA sequence Show only first row Show all	>Lus10039695 pacid=23165251 polypeptide=Lus10039695 locus=Lus10039695.g ID=Lus10039695.BGIv1.0 annot-version=v1.0 MEPFCDLCCVMKAAVYCKSDTARLCLDCDARVHSANSLARRHQRSILCSKCDSDPAVLRCLDENNLPVCQGCELWCISSGHKLHVSSNCYVGCPSWSEIL GRWSGGGGDLLDQFPSFGGVGCDPSLIRQHLNYPLPTINDLNSGSRFQPNLLVPFMSEGSKDCSNLKDICIDGLNILDDVQLNFEHGDGGIFECLQDQVV NNNTFEDVENQCCNTIERNLSFTESNGPIEGSSPGQQECAALNIQPSHVASRSSNCFYMNPNGNRANNSMNVQGFTTGETHGGQQQVHSSAMSISFSTNI SGEISSDYQDCGLSSSKAFLSGTTESPPWEATLEASSSPHTRHQAKLRYNEKKKTRRFGKQIRYASRKARAETRKRVKGRFVKAGEECDYDPSSDERLLV EEDTKVVPSSMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15250	CO	COL11	B-box type zinc finger protein...		Lus10039695 [exp]	0	1
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10032169 [exp]	6.2	0.8435
AT3G45070			P-loop containing nucleoside t...		Lus10003068 [exp]	6.6	0.8285
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10017668 [exp]	11.0	0.8260
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Lus10032421 [exp]	11.3	0.7250
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018523 [exp]	13.1	0.7552
AT3G21460			Glutaredoxin family protein (....		Lus10012815 [exp]	17.2	0.7908
					Lus10021453 [exp]	18.3	0.7681
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10041390 [exp]	18.7	0.7849
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10015550 [exp]	19.4	0.7774
AT1G49330			hydroxyproline-rich glycoprote...		Lus10015036 [exp]	21.0	0.7597

Compare expression of checked genes

Lus10039695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.