Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35730 642 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G32295 538 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 92 / 2e-19 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 91 / 5e-19 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT1G69480 84 / 6e-17 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G68740 83 / 1e-16 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 83 / 1e-16 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 82 / 4e-16 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 80 / 1e-15 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 79 / 3e-15 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027149 [exp] 797 / 0 AT5G35730 654 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10031575 [exp] 686 / 0 AT5G35730 597 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10015099 [exp] 470 / 1e-163 AT5G35730 506 / 2e-178 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 99 / 9e-22 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10011799 [exp] 95 / 2e-20 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10004285 [exp] 92 / 5e-20 AT1G69480 467 / 4e-160 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10021164 [exp] 94 / 6e-20 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10034400 [exp] 87 / 8e-18 AT1G68740 1057 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019155 [exp] 86 / 2e-17 AT1G68740 1065 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121400 [exp] 726 / 0 AT5G35730 694 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G039000 [exp] 726 / 0 AT5G35730 691 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 94 / 4e-20 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G169400 [exp] 84 / 5e-17 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G164900 [exp] 83 / 1e-16 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G110800 [exp] 82 / 3e-16 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G132300 [exp] 80 / 2e-15 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 79 / 2e-15 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 77 / 1e-14 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 76 / 3e-14 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10039696 pacid=23165006 polypeptide=Lus10039696 locus=Lus10039696.g ID=Lus10039696.BGIv1.0 annot-version=v1.0 ATGTTCGGAGGTCAAGCGATACCGCCTGGGAATAGTCCGCATTTGAGGAAGTCTGGTAGCCGATCTGTTGTGTTTGATCTTGGCGGGGAGCTGGGAAATG GTGCGGAAGAAGGGTTCTTACATACAATAGAGTCCGATAGCTTGAAGATGCTTCCCATTGCTGCTGCTGCTGCCATAATGCCGTCTCCAGTGCTGTTATG GAGATTCAAGGTGCTTCTGTTCTTCCTATGGGGTTTTGTTTGCTGTAAGATTGGATGGAGTTCTGTTATGAGAATGAGTGCAAACTTGCGGGACCTTTTT CTCTACGAGGTGTTCTTGTATTACAATCCTCTTCTTCTTGTGACATTGGCAGTTTGGTTTTGGGGTTCTAATCTGTGGGTATTCTCCCAGTCGACTGTCA GTTATGCTAAGATTTTTGATCTTGACCAAAGTCATCTCACTCACAGAGAAATATGGAAGGTTGCCATGTGGATGACCATAGTTGTCCCAAGTAGCATGAC GGCCTACCTCTATCTATATTCCCATGGAGAAGTATCGTTGGCAGCATCACAACCAGTTCTACTCTACTGTGCTGTTGCAATGCTTCTGATATTCCCGTTT GATATATTCTACTTGTCAACACGCTACTACTTGCTAAGGACTCTATGGAGGATATTATTCCCTTTGCAGGCAAGTAACCAGTTAGTCGCAATTTCGTTTG CTGACTTCTTTGTGGCTGATATCTTAACTTCCATGTCAAAGGTCTTTTCAGATATGGAGCGTTCAGTTTGTCGAATGGTTCATCGCCAGGTGGCTACAAT TGCATGGTTTGAAGCTGACTCTATCTGTGGCAGTCACTCTGTTGCAATCCCAATGGTTCTTGTTCTTCCCTACTTGTTTCGGTTGTTTCAGTGCCTTCGA CAATACAAGGATACAAGGGAGAAAACGTCTCTTCTCAACGCCTTGAAGTATTCAACTGCCGTACCAGTCATTTTCTTATCAGCCTTGAAATATCATGTCT TCCCCGATAAATGGACAAACTTTTATCGGCCTCTTTGGCTATTCTCAAGTGTCCTGAACTCTTTGTATTCCTTCTACTGGGATGTGACCCGAGATTGGGA CATGAGTGGCTTCACTAGAATCTTCAAATTCAACAGACCGAGTGTATTTTCATACATAATACATGGACGAAAATGGGTTTACTTCTGGGTTATTGGAAGC AATCTGATCCTACGTTGTACGTGGACCTACAAGCTCTCGGCTCATTTGCGCCACAACTACCTGACCGTTTTCGCGATAACAGCGCTGGAAATCTTCAGGC GGTTCCAGTGGGTGTTCTTCCGGGTCGAGAATGAATGGAACAAGATGAATGCCAAGTCAAACGCTCAGCTTGCACTGAGTGAGAAGTCAACAGAGGAAGA GAAGTCCAAGTTACTTGACTCTAGTGATCATAATGTATAG
AA sequence Show only first row Show all	>Lus10039696 pacid=23165006 polypeptide=Lus10039696 locus=Lus10039696.g ID=Lus10039696.BGIv1.0 annot-version=v1.0 MFGGQAIPPGNSPHLRKSGSRSVVFDLGGELGNGAEEGFLHTIESDSLKMLPIAAAAAIMPSPVLLWRFKVLLFFLWGFVCCKIGWSSVMRMSANLRDLF LYEVFLYYNPLLLVTLAVWFWGSNLWVFSQSTVSYAKIFDLDQSHLTHREIWKVAMWMTIVVPSSMTAYLYLYSHGEVSLAASQPVLLYCAVAMLLIFPF DIFYLSTRYYLLRTLWRILFPLQASNQLVAISFADFFVADILTSMSKVFSDMERSVCRMVHRQVATIAWFEADSICGSHSVAIPMVLVLPYLFRLFQCLR QYKDTREKTSLLNALKYSTAVPVIFLSALKYHVFPDKWTNFYRPLWLFSSVLNSLYSFYWDVTRDWDMSGFTRIFKFNRPSVFSYIIHGRKWVYFWVIGS NLILRCTWTYKLSAHLRHNYLTVFAITALEIFRRFQWVFFRVENEWNKMNAKSNAQLALSEKSTEEEKSKLLDSSDHNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10039696 [exp]	0	1
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	4.8	0.8676
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10038519 [exp]	7.7	0.8660
AT2G43240			Nucleotide-sugar transporter f...		Lus10025486 [exp]	11.3	0.8191
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10031497 [exp]	12.8	0.8597
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	13.9	0.8590
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10015099 [exp]	14.5	0.8435
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10033345 [exp]	15.8	0.8088
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	18.3	0.8518
AT5G05010			clathrin adaptor complexes med...		Lus10017131 [exp]	19.4	0.8564
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	23.7	0.8454

Compare expression of checked genes

Lus10039696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.