Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21870 201 / 2e-65 CYCP2;1 cyclin p2;1 (.1) AT2G44740 119 / 3e-33 CYCP4;1 cyclin p4;1 (.1) AT5G07450 112 / 1e-30 CYCP4;3 cyclin p4;3 (.1) AT5G61650 111 / 4e-30 CYCP4;2 CYCLIN P4;2 (.1) AT3G05327 105 / 4e-28 Cyclin family protein (.1) AT2G45080 100 / 8e-26 CYCP3;1 cyclin p3;1 (.1) AT3G60550 97 / 2e-24 CYCP3;2 cyclin p3;2 (.1) AT3G63120 88 / 4e-21 CYCP1;1 cyclin p1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027148 [exp] 340 / 5e-119 AT3G21870 233 / 6e-77 cyclin p2;1 (.1) Lus10032505 [exp] 119 / 9e-33 AT2G44740 228 / 7e-76 cyclin p4;1 (.1) Lus10043003 [exp] 118 / 2e-32 AT2G44740 227 / 2e-75 cyclin p4;1 (.1) Lus10042582 [exp] 114 / 4e-31 AT3G63120 191 / 2e-61 cyclin p1;1 (.1) Lus10022038 [exp] 114 / 7e-31 AT3G63120 197 / 8e-64 cyclin p1;1 (.1) Lus10029933 [exp] 108 / 7e-29 AT3G05327 172 / 3e-54 Cyclin family protein (.1) Lus10004475 [exp] 106 / 4e-28 AT3G05327 171 / 1e-53 Cyclin family protein (.1) Lus10042873 [exp] 100 / 1e-25 AT3G60550 300 / 8e-104 cyclin p3;2 (.1) Lus10028174 [exp] 88 / 2e-21 AT2G45080 249 / 1e-84 cyclin p3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121500 [exp] 218 / 2e-71 AT3G21870 228 / 5e-76 cyclin p2;1 (.1) Potri.014G050400 [exp] 126 / 3e-36 AT2G44740 285 / 8e-99 cyclin p4;1 (.1) Potri.012G114600 [exp] 123 / 9e-35 AT2G44740 277 / 2e-95 cyclin p4;1 (.1) Potri.015G112140 [exp] 117 / 9e-33 AT2G44740 274 / 1e-94 cyclin p4;1 (.1) Potri.002G052800 [exp] 113 / 2e-30 AT3G63120 219 / 1e-71 cyclin p1;1 (.1) Potri.005G209800 [exp] 108 / 4e-29 AT3G63120 223 / 7e-74 cyclin p1;1 (.1) Potri.013G023000 [exp] 108 / 5e-29 AT3G05327 194 / 4e-63 Cyclin family protein (.1) Potri.005G033600 [exp] 100 / 5e-26 AT3G05327 184 / 5e-59 Cyclin family protein (.1) Potri.014G066400 [exp] 99 / 4e-25 AT3G60550 343 / 3e-121 cyclin p3;2 (.1) Potri.002G143400 [exp] 97 / 2e-24 AT2G45080 324 / 1e-113 cyclin p3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF08613 [flax] [poplar] Cyclin Cyclin
Representative CDS sequence Show only first row Show all	>Lus10039697 pacid=23165383 polypeptide=Lus10039697 locus=Lus10039697.g ID=Lus10039697.BGIv1.0 annot-version=v1.0 ATGTTAGCCACCGGGGACCTCACCACCGGCGACAACCGGCAATCATCGGAGCAAGCGACGCCGCCGAGAGTCCTGACGGTACTATCCCATGTGCTGGAGA AGCTGGTGGCTAGAAACGACATGCTGCAGGTGGAATGGAACGTGAATGGTGGGAAATTAGGAGGATTGAATTCCTTCCATGGAGTTAGAGCTCCAAGTAT AAGCATACTCAGTTACTTGGAGAGGCTGTACAAGTACACTGAATGCAGCCCTTCGTGCTTCGTGGTTGGTTATGTCTATATCGACCGGCTGATTCACAAG CACCCTGATTCTCTGCTGGTTTCACTCAATGTTCATCGCTTGCTGCTCACTTGTGTCCTGGTTGCTTCCAAGATGCTTGATGATGTGCACCAAAACAATG CGTTTTACGCAAGAGTAGGAGGAGTGAGCAACGCAGAACTGAACAAGCTTGAAATTGAGCTTCTTTTCCTCCTTGATTACGGACTCACCGTTACTTCTCG AGTTTTCGAGAGCTATTGCAACCACTTGGAGCAGGAAATGATGCTCACTACCAGTAATGGCGCCACTTCTTCTTTGACTGATCATGATCCTGCCGCCGCC GCCATTAATGGTGAAGTGGTTTCTTTGTCCTCACCTTCAAGCGGCAGCAATGGCGCCGGAGCAGTGCTACCTGCCTTGAGATCCTTGTAA
AA sequence Show only first row Show all	>Lus10039697 pacid=23165383 polypeptide=Lus10039697 locus=Lus10039697.g ID=Lus10039697.BGIv1.0 annot-version=v1.0 MLATGDLTTGDNRQSSEQATPPRVLTVLSHVLEKLVARNDMLQVEWNVNGGKLGGLNSFHGVRAPSISILSYLERLYKYTECSPSCFVVGYVYIDRLIHK HPDSLLVSLNVHRLLLTCVLVASKMLDDVHQNNAFYARVGGVSNAELNKLEIELLFLLDYGLTVTSRVFESYCNHLEQEMMLTTSNGATSSLTDHDPAAA AINGEVVSLSSPSSGSNGAGAVLPALRSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10039697 [exp]	0	1
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10016783 [exp]	3.2	0.9493
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10041209 [exp]	5.3	0.9383
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10028451 [exp]	5.3	0.9484
AT2G35260			unknown protein		Lus10030958 [exp]	5.9	0.9302
AT2G30570		PSBW	photosystem II reaction center...		Lus10024858 [exp]	6.5	0.9392
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10028806 [exp]	10.5	0.9331
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10033434 [exp]	10.7	0.9310
AT1G52590			Putative thiol-disulphide oxid...		Lus10036091 [exp]	15.0	0.9030
AT3G61870			unknown protein		Lus10010112 [exp]	16.7	0.9205
AT1G18060			unknown protein		Lus10017999 [exp]	17.9	0.9253

Compare expression of checked genes

Lus10039697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.