Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22060 144 / 6e-42 Receptor-like protein kinase-related family protein (.1) AT3G58310 127 / 2e-35 Domain of unknown function (DUF26) (.1) AT3G21990 97 / 2e-23 Domain of unknown function (DUF26) (.1) AT4G20670 94 / 1e-22 Domain of unknown function (DUF26) (.1) AT3G21940 88 / 3e-20 Receptor protein kinase-related (.1) AT2G31620 84 / 5e-19 Receptor-like protein kinase-related family protein (.1) AT3G22000 84 / 1e-18 Domain of unknown function (DUF26) (.1) AT4G20680 83 / 1e-18 Domain of unknown function (DUF26) (.1) AT3G21945 80 / 2e-18 Receptor-like protein kinase-related family protein (.1) AT3G22010 82 / 5e-18 Receptor-like protein kinase-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027145 [exp] 202 / 3e-64 AT3G22060 253 / 8e-85 Receptor-like protein kinase-related family protein (.1) Lus10027143 [exp] 125 / 2e-34 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10018377 [exp] 84 / 6e-18 AT4G05200 489 / 4e-164 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10027144 [exp] 77 / 4e-17 ND 121 / 1e-34 Lus10018382 [exp] 77 / 1e-15 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 75 / 8e-15 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10007634 [exp] 73 / 3e-14 AT4G23160 417 / 1e-137 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10038227 [exp] 71 / 5e-14 AT5G48540 261 / 1e-87 receptor-like protein kinase-related family protein (.1) Lus10025875 [exp] 69 / 2e-13 AT5G48540 261 / 2e-87 receptor-like protein kinase-related family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120500 [exp] 149 / 1e-43 AT3G22060 278 / 6e-95 Receptor-like protein kinase-related family protein (.1) Potri.007G120700 [exp] 145 / 3e-42 AT3G22060 275 / 2e-93 Receptor-like protein kinase-related family protein (.1) Potri.007G120401 [exp] 144 / 5e-42 AT3G22060 271 / 3e-92 Receptor-like protein kinase-related family protein (.1) Potri.007G120400 [exp] 144 / 5e-42 AT3G22060 270 / 8e-92 Receptor-like protein kinase-related family protein (.1) Potri.007G120501 [exp] 141 / 1e-40 AT3G22060 271 / 4e-92 Receptor-like protein kinase-related family protein (.1) Potri.017G039966 [exp] 139 / 9e-40 AT3G22060 273 / 5e-93 Receptor-like protein kinase-related family protein (.1) Potri.017G040450 [exp] 136 / 6e-39 AT3G22060 274 / 4e-93 Receptor-like protein kinase-related family protein (.1) Potri.017G040049 [exp] 123 / 1e-33 AT3G22060 221 / 9e-72 Receptor-like protein kinase-related family protein (.1) Potri.017G040300 [exp] 122 / 3e-33 AT3G22060 226 / 3e-74 Receptor-like protein kinase-related family protein (.1) Potri.007G120600 [exp] 113 / 6e-30 AT3G22060 214 / 2e-69 Receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10039699 pacid=23165189 polypeptide=Lus10039699 locus=Lus10039699.g ID=Lus10039699.BGIv1.0 annot-version=v1.0 ATGCTCAAGTACAAGGACACAAACTTCTTCGGCAAGGTAGACAACAACCAGAGGTTCTACATGTGGAACACGAGGGTGGTTTCCGATCCGGCCACGTTCA ATGCCAAGACGAAGGAGTTACTGACCAAGCTGTCGAAGGAGGCTTCGTCTTCTTCGCCCTCAAAGTTGTACGCCTCGGGGGAGATGGAGATCGACAACAA GAACAAGGTGAAGCTTCGCGGGCTTGTTCAGTGCACTCGAGACTTGTCGGATGAGGATTGCGGGAAGTGTGTTGATGGGATCATAGGGGAGCTTCCTAGT TGTTGTGATGGTAAAGAAGGTGGTAGGGTTGTGGGTGGGAGTTGTAACTTTAGGTACGAGATTTACCCTTTTCTTAATGGGCATATGAAATTTGCATCGT GCTCTATAAAAAATGGCTTTGTAGACAATGTGCTCCACACTTGCCACCCTAAGTTTATATCTCTTACTGGAGAAGAAGATCAAATACCAAATAGCAAGTT TTTGATTGCTCTTAAGTTTAGGGATGAAGCTCGAAGTCAACATTCTTTCAACCATTTCCCCTGTCTCCCCTGCCCCTGCGCCAGAGCAATCTCTATCTCC TGCCTCGTCTCTGCCTTTCCCCAAAGTCGAATTGCCGGCGGAGGAATCTCACCTCTGCCGCCGCCTGACCTGGAAATTCCAGTTCTGGGAAGCTCCCCTG CATTGTCTCCGTTTCCGACGGGTACCTCTGCTCTGACTCCGCCGTCTGTGGATTCGTCGTCAGCTGAGGGAAATGGGTTCGGCTCGATTCAGGGGATTGT CGTCGGATTCTGCTCGCTAGTAGCGGCTGTGATTGTGGTGATGGGTTGA
AA sequence Show only first row Show all	>Lus10039699 pacid=23165189 polypeptide=Lus10039699 locus=Lus10039699.g ID=Lus10039699.BGIv1.0 annot-version=v1.0 MLKYKDTNFFGKVDNNQRFYMWNTRVVSDPATFNAKTKELLTKLSKEASSSSPSKLYASGEMEIDNKNKVKLRGLVQCTRDLSDEDCGKCVDGIIGELPS CCDGKEGGRVVGGSCNFRYEIYPFLNGHMKFASCSIKNGFVDNVLHTCHPKFISLTGEEDQIPNSKFLIALKFRDEARSQHSFNHFPCLPCPCARAISIS CLVSAFPQSRIAGGGISPLPPPDLEIPVLGSSPALSPFPTGTSALTPPSVDSSSAEGNGFGSIQGIVVGFCSLVAAVIVVMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22060			Receptor-like protein kinase-r...		Lus10039699 [exp]	0	1
AT3G22060			Receptor-like protein kinase-r...		Lus10039698 [exp]	1.0	0.9618
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10005343 [exp]	1.4	0.8837
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	1.7	0.8753
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10004984 [exp]	2.4	0.8482
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10040475 [exp]	5.1	0.8154
AT4G24110			unknown protein		Lus10017328 [exp]	6.0	0.8569
AT2G27080			Late embryogenesis abundant (L...		Lus10026762 [exp]	9.7	0.8518
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10042916 [exp]	9.9	0.8258
AT2G43590			Chitinase family protein (.1)		Lus10035620 [exp]	11.2	0.8088
					Lus10039778 [exp]	12.4	0.8221

Compare expression of checked genes

Lus10039699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.