Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039700 pacid=23164998 polypeptide=Lus10039700 locus=Lus10039700.g ID=Lus10039700.BGIv1.0 annot-version=v1.0 ATGTTCTATGTGGGGAAAGCAACCAAGATCTTCATCTTCATCGTCACGGTGGCGGTTGTCGGCGGACTCATTTTGGGCTTCGGCGTACTCCGCCACCACG GCGGAGGGAAATCGGGCGGCGGAAAATGCTCCCCTGAAGATGATTCCTGCAGCTACTCACCTCCCGCGGGTTCTTCTGTGTTTCCCAATCCGGCTAATCC GTCGCCGATTACCTCCAGCCCAATCTCAACTCAGCCGACTCCGACAGCTCCTGATTTGAGCAATCCGTCGCCGCCGCCTGGATCCAGTTCCGGCCAATCA AATCCATCTCCTCCTCCTCCGCCGTCTACGACTCCGCCTGAATCTAGCTCAAATCCACCTCCTTTGCAGCAAATTCCGTCTCCGCCTCCACCTCCGGTTG CGGAGAATGTGTCTCCGCCCTCTCCGCCGATGCAGGCGTCCCCATCTCCGCCGCCGCCTAGCGGGCAAGCGATAACGGGAGCTCCGCCGCCGTCGTCGCA ATCGTTCAATCCGCCGAGTGGGGGGACAGCGTTAACGACTCCAGGTCCTGTGCATGCTTAA
AA sequence Show only first row Show all	>Lus10039700 pacid=23164998 polypeptide=Lus10039700 locus=Lus10039700.g ID=Lus10039700.BGIv1.0 annot-version=v1.0 MFYVGKATKIFIFIVTVAVVGGLILGFGVLRHHGGGKSGGGKCSPEDDSCSYSPPAGSSVFPNPANPSPITSSPISTQPTPTAPDLSNPSPPPGSSSGQS NPSPPPPPSTTPPESSSNPPPLQQIPSPPPPPVAENVSPPSPPMQASPSPPPPSGQAITGAPPPSSQSFNPPSGGTALTTPGPVHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22070			proline-rich family protein (....		Lus10039700 [exp]	0	1
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10038765 [exp]	1.0	0.9187
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	5.5	0.8937
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Lus10016757 [exp]	5.8	0.8848
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10021862 [exp]	6.9	0.8960
AT4G14930			Survival protein SurE-like pho...		Lus10004909 [exp]	7.3	0.8770
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	7.6	0.9136
AT3G12110		ACT11	actin-11 (.1)		Lus10005457 [exp]	8.7	0.9095
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021870 [exp]	10.4	0.8992
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	11.0	0.8808
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10003967 [exp]	14.4	0.8785

Compare expression of checked genes

Lus10039700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.