Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15210 723 / 0 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT2G32290 701 / 0 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT3G23920 451 / 3e-152 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G00490 450 / 6e-152 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT4G17090 442 / 5e-149 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT2G45880 402 / 1e-131 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 351 / 7e-112 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G55700 341 / 5e-110 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT5G18670 246 / 1e-73 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1) AT5G66520 56 / 1e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018491 [exp] 1057 / 0 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 891 / 0 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10011035 [exp] 448 / 3e-151 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 446 / 3e-150 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10004396 [exp] 445 / 1e-149 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 441 / 4e-148 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10037846 [exp] 417 / 3e-139 AT4G00490 684 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10040134 [exp] 409 / 6e-136 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10003005 [exp] 407 / 6e-136 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G040800 [exp] 794 / 0 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.001G148900 [exp] 455 / 4e-154 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.014G083800 [exp] 452 / 4e-153 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.010G062900 [exp] 445 / 1e-149 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G085500 [exp] 442 / 5e-149 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.002G159300 [exp] 439 / 1e-145 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.008G174100 [exp] 435 / 1e-145 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.014G083700 [exp] 430 / 3e-142 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.003G106500 [exp] 359 / 5e-115 AT5G45300 831 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Potri.003G143500 [exp] 338 / 3e-108 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10039701 pacid=23165330 polypeptide=Lus10039701 locus=Lus10039701.g ID=Lus10039701.BGIv1.0 annot-version=v1.0 ATGACGACGGTGATGCAATGTAACAACCACCACCACCGCCAGAGCCAGTTTCCAGCGGCGGCGGCGGTGAAACGTGGGAGTGATGGGCTGAGTCAAGAGA AGGTTAGTGATCGTGGGTTCAGGAATCTCCGTCGTCGGATGAATGGTGTAAATTATTCGAGTGGTGGTGGAGCGGATCAGGTTGTGTTAACGCGGGAGAT TACTTCCACCGCAGAAGTAGCTCAGGCTCCGACTTATGACGAGAAGATGCTTGCAAACTACGTCCCAACATTCGTCATGCTCCCATTGGGAGTAGTCACG CCTGACAATGTCTTCGAGAACAAGGACGTCGTGGAGAAGCAACTGAAGGAGCTGAAATCAGCAGGGATAGATGGGATCATGATCGACGTATGGTGGGGGA TCATCGAAGCCAAAGGGCCGAAACAGTACGACTGGAGTGGCTACAAGGAGCTTTTCGAGTTACTCAAGGCATTGGACCTGAAAATCCAAGCTATAATGTC TTTCCATCAGTGTGGTGGCAATGTTGGTGACAATGTCTTCATCCCTCTCCCTGATTGGGTCCTCAAAGTCGGGGAGGTTGATCCCGATGTCTTCTACACC AATAGGGCCGGTGTTCGGAACAAGGAGTACCTGTCTCTTGGTGTCGACCACCTCCCTCTTTTCGGTGGCCGATCTCCTGTTCAGATCTACGCTGACTACA TGAAGAGTTTCAGGGAGACCATGGCGGAATACTTCGATTCGCGGTTGATAATCGACATCGAAGTAGGGCTTGGACCGGCAGGGGAGCTTAGATACCCATC TTATCCTGAGACACAAGGATGGGTTTTCCCTGGAATTGGAGAGTTTCAGTGCTATGACAAGTACATGGCAGCTGAGTTCAGAAAGGCAGCAATAGAGGCA GGGCATCCTGAGTGGGAATTGCCTGATGATGGAGGGGAATACAATAATACCCCTGATCAAACAGGGTTCTTCAAATCCAACGGCTCATATCTTTCTGAAA AGGGCAAGTTTTTCCTGACGTGGTACTCCAACAAGTTGCTTTTCCATGGAGATAACATCCTTGATGAGGCCAACAAGGCCTTTTTGGGATGCAAGGTCAA ATTGGCTGCCAAGGTTTCCGGAATCCATTGGTGGTACACGGATCCGAGCCACGCATCGGAGCTGACTGCAGGGTACTACAACTTGAAGGATCGGGATGGG TACCGACCGGTGGCGAGGATGATGTCAAGGCACCACGGACTTGTGAACTTCACTTGCTTGGAAATGAGGAACACTGAGCAGCCCGCCATGGCCAAGAGTG CTCCCCAACAGCTTGTCCAACAGGTTTTGAGTGACGCGTGGAGAGAAGGGATCGACGTGGCGGGAGAGAATGCGTTGGCAAGGTACGACGCCGGAGGATA CAACCAGATCCTTCTGAACGCTAGACCTAACGGGATTCGCCCATCAAAGGATGGGGAGAAAAAGTTGCGGATGTATGGAGTTACAATCCTCCGTCTGACG GATGATCTGTTGGAACAGAAGAATTTCGATGTGTTCAAGAAGTTCGTAAGGAGGATGCATGCCAACCAGGACTATTGTGGAGATTCGAGCAAGTATGGGC ATGAAATCGGAGTTTTGGAGAGATCTAAGGGCAAATTGGGAATGGATGAGCTTATGGAGGCAACTAAGCCAATAGAGCCGTATCCATGGGATGAAGAAAC TGATATGCCTGTTGAGCCTGTAGCTAGTTTATGCCCAACTTTTGCTAAACTACCAGTCATTTCAACAAGAACACAACCCATCTCTGAAGTGATGGAACCT CCTGATATCACGCATCACTATCTCTCGACCCGTAACCTTCGAGATAAGCTTCGTTACTTAGTGGCAAGCCTTGCATACACGAAGGTTCTTCGTGACCCTT ACGATGGTTCCTGGACCGGTGTTCACTAG
AA sequence Show only first row Show all	>Lus10039701 pacid=23165330 polypeptide=Lus10039701 locus=Lus10039701.g ID=Lus10039701.BGIv1.0 annot-version=v1.0 MTTVMQCNNHHHRQSQFPAAAAVKRGSDGLSQEKVSDRGFRNLRRRMNGVNYSSGGGADQVVLTREITSTAEVAQAPTYDEKMLANYVPTFVMLPLGVVT PDNVFENKDVVEKQLKELKSAGIDGIMIDVWWGIIEAKGPKQYDWSGYKELFELLKALDLKIQAIMSFHQCGGNVGDNVFIPLPDWVLKVGEVDPDVFYT NRAGVRNKEYLSLGVDHLPLFGGRSPVQIYADYMKSFRETMAEYFDSRLIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYMAAEFRKAAIEA GHPEWELPDDGGEYNNTPDQTGFFKSNGSYLSEKGKFFLTWYSNKLLFHGDNILDEANKAFLGCKVKLAAKVSGIHWWYTDPSHASELTAGYYNLKDRDG YRPVARMMSRHHGLVNFTCLEMRNTEQPAMAKSAPQQLVQQVLSDAWREGIDVAGENALARYDAGGYNQILLNARPNGIRPSKDGEKKLRMYGVTILRLT DDLLEQKNFDVFKKFVRRMHANQDYCGDSSKYGHEIGVLERSKGKLGMDELMEATKPIEPYPWDEETDMPVEPVASLCPTFAKLPVISTRTQPISEVMEP PDITHHYLSTRNLRDKLRYLVASLAYTKVLRDPYDGSWTGVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039701 [exp]	0	1
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10027279 [exp]	1.7	0.9170
AT4G34180			Cyclase family protein (.1)		Lus10001508 [exp]	2.6	0.9025
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039702 [exp]	4.8	0.9247
AT5G63710			Leucine-rich repeat protein ki...		Lus10035959 [exp]	7.6	0.9183
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10034716 [exp]	8.4	0.8693
					Lus10017954 [exp]	8.7	0.9105
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10042750 [exp]	9.2	0.8960
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	12.5	0.9033
					Lus10025225 [exp]	13.9	0.8994
					Lus10010378 [exp]	16.1	0.9034

Compare expression of checked genes

Lus10039701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.