Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15210 660 / 0 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT2G32290 643 / 0 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT3G23920 406 / 2e-136 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G00490 403 / 2e-135 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT4G17090 401 / 1e-134 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT2G45880 350 / 4e-113 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 318 / 1e-100 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G55700 298 / 7e-95 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT5G18670 197 / 2e-56 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039701 [exp] 828 / 0 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 779 / 0 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10004396 [exp] 410 / 4e-138 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10001087 [exp] 400 / 3e-134 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 399 / 4e-134 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10023700 [exp] 398 / 2e-133 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10037846 [exp] 369 / 4e-122 AT4G00490 684 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10040134 [exp] 365 / 1e-120 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10003005 [exp] 360 / 3e-119 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G040800 [exp] 717 / 0 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.014G083800 [exp] 412 / 4e-139 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.010G062900 [exp] 410 / 1e-137 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G148900 [exp] 405 / 1e-136 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.008G174100 [exp] 401 / 2e-134 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G085500 [exp] 396 / 9e-133 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.002G159300 [exp] 390 / 1e-128 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083700 [exp] 382 / 1e-125 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.003G106500 [exp] 330 / 8e-106 AT5G45300 831 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Potri.003G143500 [exp] 291 / 9e-92 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10039702 pacid=23165346 polypeptide=Lus10039702 locus=Lus10039702.g ID=Lus10039702.BGIv1.0 annot-version=v1.0 ATGCAGGCTCCAACTTACGACGAAAAGATGCTATTGAACTACGTCCCAACTTTCGTTATGCTCCCTTTGGGAGTCGTCACGCGTGACAATGTCTTCGAGA ACAAGGAAGAAGTGGAGAAGCAACTGAAGAAGCTGAAATCGGCCGGGATAGATGGAGTCATGATCGATGTATGGTGGGGGATCATCGAAGCCAAGGGGCC TAAACAGTACGACTGGAGTGGCTACAGGGAGCTTTTCGAGTTACTCAAGGAACTGGACCTGAAAATCCAAGCTATAATGTCTTTCCACAAGTGTGGTGGC AATGTTGGTGACAATGTCGTCATCCCTCTCCCCGATTGGGTCCTCAAAGTCGGGGAGGATGACCAGGATGTCTTCTACACCGATAGGGCCGGTGTTAGGA ACGAGGAGTATCTGTCTCTTGGTGTTGACCACCTCCCTCTTTTTGGCAAGAGGGCCAGTGTTGGGAACATGGAGTATGAGTCTCCTGATGTCGACCAGCT CCCTTTTTGCGGCCGCTCTCCTGTTCAGATCTACGGGGATTTTATGAAGAGTTTTAGGGAGAACATGGCGGATTTCTTCGATTCTGGGCTGATCATCGAC ATCGAAGTAGGGCTTGGACCAGCAGGGGAGCTTAGATATCCATCTTATCCTGCGCTACAGGGATGGGTTTTCCCTGGAATTGGAGAGTTTCAGTGCTATG ACAAGTACATGGCAGCTGACTTCAAAAAGGCAGCAATGGAGGCAGGGCATCCTGAGTGGGAATTGCCTGATGATGCAGGAGAATACAATAATACCCCTGA TCAAACAGGGTTCTTCAAATCCAACGGCTCTTATCTTTCTGAAAAGGGCAAGTTTTTCCTGACGTGGTATTCCCACAAGTTGCTTGTCCATGGAGATAAC ATCTTGGATGAGGCCAACAAGGCCTTTTTGGGATGCAAGGTCAAATTGGCTATCAAGGTTTCTGGAATTTTTTGGTGGTACATGCATCCGAGCCATGCTG CGGAGCTGGTTGCAGGGTACTACAACTTGAACGATCGAGACGGGTACCGACCGGTGGCGAGGATGGTGTCGAGGCACCACGGACTTGTGAACTTCACTTG CTTGGAAATCAGGAACACTGAGTGGCCTGCCGAGTCCAAGAGTGCTCCCCAACAGCTTGTCCAGCAAGTCTTGAGTGCCTCGTGGAGGGAAGGAATCGAC GTGGCGGGAGAGAACGCATTGCCAAGGTACGACGTCGATGCATACAACCAGATCCTCTTGAACGCTAGACCTAATGGGGTTTCAAAGAATGGGGAGAAGA AACTACGGATGTATGGAGTCACAATCCTCCGGTTAACGGATGGTCTGTTGGAACAGAAGAATTTTGAAGTGTTCAAGAAATTCGTAAGGAGGATGCATGC CAACCAGGATTATTGTGGAGATGCTAGCAAGTACGGGCATGAAATTGGAAAATTGGAGAGGTCTGTTAAGGAGGTGACTAAACCAATAGAGCCGTATCCA TGGGATGAAGAAACTGATATGCCTGTTGAGCCTTGA
AA sequence Show only first row Show all	>Lus10039702 pacid=23165346 polypeptide=Lus10039702 locus=Lus10039702.g ID=Lus10039702.BGIv1.0 annot-version=v1.0 MQAPTYDEKMLLNYVPTFVMLPLGVVTRDNVFENKEEVEKQLKKLKSAGIDGVMIDVWWGIIEAKGPKQYDWSGYRELFELLKELDLKIQAIMSFHKCGG NVGDNVVIPLPDWVLKVGEDDQDVFYTDRAGVRNEEYLSLGVDHLPLFGKRASVGNMEYESPDVDQLPFCGRSPVQIYGDFMKSFRENMADFFDSGLIID IEVGLGPAGELRYPSYPALQGWVFPGIGEFQCYDKYMAADFKKAAMEAGHPEWELPDDAGEYNNTPDQTGFFKSNGSYLSEKGKFFLTWYSHKLLVHGDN ILDEANKAFLGCKVKLAIKVSGIFWWYMHPSHAAELVAGYYNLNDRDGYRPVARMVSRHHGLVNFTCLEIRNTEWPAESKSAPQQLVQQVLSASWREGID VAGENALPRYDVDAYNQILLNARPNGVSKNGEKKLRMYGVTILRLTDGLLEQKNFEVFKKFVRRMHANQDYCGDASKYGHEIGKLERSVKEVTKPIEPYP WDEETDMPVEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039702 [exp]	0	1
AT5G66900			Disease resistance protein (CC...		Lus10020779 [exp]	2.4	0.9545
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	2.6	0.9455
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	3.2	0.9486
AT5G36930			Disease resistance protein (TI...		Lus10004726 [exp]	3.5	0.9611
AT3G18670			Ankyrin repeat family protein ...		Lus10035567 [exp]	4.0	0.9505
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039701 [exp]	4.8	0.9247
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10001999 [exp]	4.9	0.9458
AT5G36930			Disease resistance protein (TI...		Lus10010987 [exp]	5.5	0.9555
AT2G36650			unknown protein		Lus10023883 [exp]	8.0	0.9430
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10042750 [exp]	8.5	0.9238

Compare expression of checked genes

Lus10039702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.