Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18750 382 / 2e-122 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G05240 358 / 8e-117 MEF19 mitochondrial editing factor 19 (.1) AT2G03380 358 / 5e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 357 / 2e-114 MEF22 mitochondrial editing factor 22 (.1) AT1G08070 345 / 2e-109 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 334 / 1e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 333 / 2e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 333 / 3e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 332 / 6e-105 SLO1 SLOW GROWTH 1 (.1) AT1G11290 335 / 8e-105 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018492 [exp] 1029 / 0 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033858 [exp] 369 / 3e-120 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 359 / 7e-115 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 361 / 2e-114 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010320 [exp] 353 / 4e-114 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030053 [exp] 354 / 5e-113 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008136 [exp] 349 / 3e-112 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 355 / 1e-111 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013176 [exp] 344 / 2e-110 AT5G39350 621 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161800 [exp] 375 / 6e-121 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 366 / 7e-118 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 367 / 2e-116 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 358 / 5e-115 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 361 / 3e-114 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G111900 [exp] 354 / 4e-113 AT4G33990 518 / 1e-173 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 356 / 6e-113 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 353 / 1e-112 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G124400 [exp] 350 / 5e-112 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G005700 [exp] 347 / 7e-111 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039703 pacid=23165267 polypeptide=Lus10039703 locus=Lus10039703.g ID=Lus10039703.BGIv1.0 annot-version=v1.0 ATGAATGGCAAGCTCACGATCAACAATGCCAAATTCCAGCGACCAATGCTACTCCTCTGGAAATCTGGATTCAGCTCAATCGCTCCCAATGGCACGGCGG ATTCCGCAAATCCTTCTCTCCGATTCCCTCTTCCATCCCTACAATGCGGATCCATCTTAAAATCGCTCACGAACTCCAAATCTCTCATGGAAGGCCGTAA GCTCCACGCCCACGTAACAACCAGCGGCAGTCTCATTCACAACACTTACTTGAGCACCAAACTATCCGCTTTCTACGCAAGCTGCGGAGAAATGGAAACA GCCGAGATTATCTTCAATGGAGTCCAATCCAAAAGTTCGTTCCTTTGGAATTTCATGATTAGAGGGTATGCCAGCAGCGGGGTTTCTAGGAAAGCTCTGG CTTTGTACAGGGAGATGTTGAGGTCTGGTTTGAAAGCGGATAATTTCAATTTCCCTTTCGTCGTCAAAGCTTGTGGCGATTTGTTGAAAGTAAGGATTGG AAGGAAAGTTCATGGGGAGGTTGTTGTTTGTGGGTTTGAATCGGATGTCTACGTTGGGAACTCTCTCATAGCAATGTACTCAAAGTGTGGGGCTATGGTA GTTGCACGGAAGGTGTTTGATAAAATGCCTGTGAGAGATTTGACTTCTTGGAACTCAATGATATCAGGTTACGTGAAGAATGGGATGGCGGGAGAAGCTT TGACTACGTTTCGGTCGATGAAGGAAGGCGGAGTTTTGTTGGATGGCACTACTTTACTTGGTGTTCTCTCTTGCTGTGCTGAATTGTTGATGCTGAAGCA AGGGAAAGAAGTTCATGGCTATGTGTTAAGAAATGGGCATGCTTTTTACAATACCTTTCTGGAGAATTCACTGGTTGAACTTTACTGCCAGTGTAGTTCC ATGGATTGTGCCAAAAAATTGTTTGAGACAATGGCAATGAAGAAAGATACAGTGTCGTGGAACTCTTTGATTGCAGGCTACGCAAGAAGAGAAGATTCAT TCGAAAGCCTGAGGGCTTTTAACAGAATGGTTTCGGAAGGGTTCGAGCCGGATCAAGTAACTTACGTGACTGTGCTCGGAGTTAGTGAAAAGATTACATC TTTACAATTTGGGATGTCTCTCCATGCAAGTGTGATAAAGTTAGGGTTTTTTGGTGCAACTACAACAATGGTGGCAACTGCACTCATAGACATGTATGCA AAATGCGGGAGTCTAGCTTGTTCGCGATTGGTGTTCGACGAAATGCATCATCATCGGAAAAATTTGGTTTCTTGGAGTGCCATGATTTCTGGATACCGCA TTCATGGGAGGGCAAGAGAGGCTATTGAGTTGTTCAATCGAATGGTTGATGATGAAACCGGTATCGTACCGGATGAGGGTGTTCTCACTTCGGTTCTATC TGCTTGTAGCCATGGTGGATTAGTAAATGAAGGCAGAGAGATTTTCAACAACATAAGAACTCCTGCAATGGCTCATTACTCATGTTATGTAGATCTCCTT AGCCGGTCCGGTCGGTTAACCGAAGCTCACAAGGTGATTGGAACCATGGAAATCGATCCCTCGGTGGACGTTTGGGCTGCTCTACTCAACGGTTGTCGCC TGCACAACAATCTCGAGCTAGCGGAGATCGCAGCGAGCGAGATCGTGTCCCTGAATCCTAACAATGTGAGTAGTTACGTCTCCCTTGCGAACGTCTATGC AGCGGAGAAGCGATGGGGAGATGTCGAAAGGGTAAGATTGGTGGTGAGAAGTAAAGGGCTGACGAAACCGCCAGGTTGCAGCTCTGGTGAACCGGTCCGG GAACCATTATAA
AA sequence Show only first row Show all	>Lus10039703 pacid=23165267 polypeptide=Lus10039703 locus=Lus10039703.g ID=Lus10039703.BGIv1.0 annot-version=v1.0 MNGKLTINNAKFQRPMLLLWKSGFSSIAPNGTADSANPSLRFPLPSLQCGSILKSLTNSKSLMEGRKLHAHVTTSGSLIHNTYLSTKLSAFYASCGEMET AEIIFNGVQSKSSFLWNFMIRGYASSGVSRKALALYREMLRSGLKADNFNFPFVVKACGDLLKVRIGRKVHGEVVVCGFESDVYVGNSLIAMYSKCGAMV VARKVFDKMPVRDLTSWNSMISGYVKNGMAGEALTTFRSMKEGGVLLDGTTLLGVLSCCAELLMLKQGKEVHGYVLRNGHAFYNTFLENSLVELYCQCSS MDCAKKLFETMAMKKDTVSWNSLIAGYARREDSFESLRAFNRMVSEGFEPDQVTYVTVLGVSEKITSLQFGMSLHASVIKLGFFGATTTMVATALIDMYA KCGSLACSRLVFDEMHHHRKNLVSWSAMISGYRIHGRAREAIELFNRMVDDETGIVPDEGVLTSVLSACSHGGLVNEGREIFNNIRTPAMAHYSCYVDLL SRSGRLTEAHKVIGTMEIDPSVDVWAALLNGCRLHNNLELAEIAASEIVSLNPNNVSSYVSLANVYAAEKRWGDVERVRLVVRSKGLTKPPGCSSGEPVR EPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	0	1
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	1.4	0.8917
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10038839 [exp]	1.7	0.8883
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	2.2	0.8968
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	4.5	0.8460
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10036373 [exp]	6.2	0.8032
AT3G46870			Pentatricopeptide repeat (PPR)...		Lus10016476 [exp]	6.6	0.8265
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	7.2	0.8510
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10025009 [exp]	7.3	0.8428
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10003857 [exp]	8.5	0.8070
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	9.5	0.8365

Compare expression of checked genes

Lus10039703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.