Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77980 74 / 2e-15 MADS AGL66 AGAMOUS-like 66 (.1) AT1G22130 73 / 3e-15 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77950 68 / 1e-13 MADS AGL67 AGAMOUS-like 67 (.1.2) AT1G71692 60 / 8e-11 MADS XAL1, AGL12 XAANTAL1, AGAMOUS-like 12 (.1) AT1G69540 59 / 4e-10 MADS AGL94 AGAMOUS-like 94 (.1) AT2G45660 55 / 3e-09 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT2G03060 55 / 1e-08 MADS AGL30 AGAMOUS-like 30 (.1.2) AT4G11880 54 / 1e-08 MADS AGL14 AGAMOUS-like 14 (.1) AT3G30260 54 / 2e-08 MADS AGL79 AGAMOUS-like 79 (.1) AT1G18750 53 / 4e-08 MADS AGL65, AGL102 AGAMOUS-like 65 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018493 [exp] 318 / 2e-111 AT1G77980 88 / 2e-20 AGAMOUS-like 66 (.1) Lus10022506 [exp] 76 / 4e-16 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10016810 [exp] 68 / 2e-13 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10019089 [exp] 59 / 7e-10 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2) Lus10034464 [exp] 59 / 8e-10 AT1G18750 281 / 1e-88 AGAMOUS-like 65 (.1.2) Lus10024823 [exp] 57 / 1e-09 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1) Lus10018714 [exp] 55 / 7e-09 AT1G22130 122 / 7e-33 AGAMOUS-like 104 (.1) Lus10034662 [exp] 54 / 2e-08 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10030450 [exp] 54 / 2e-08 AT2G03060 301 / 4e-100 AGAMOUS-like 30 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G120002 [exp] 90 / 4e-23 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1) Potri.002G092300 [exp] 76 / 5e-16 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.007G087500 [exp] 74 / 1e-15 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.019G076800 [exp] 58 / 2e-10 AT1G71692 237 / 9e-80 XAANTAL1, AGAMOUS-like 12 (.1) Potri.013G102600 [exp] 57 / 7e-10 AT1G71692 250 / 4e-85 XAANTAL1, AGAMOUS-like 12 (.1) Potri.010G167300 [exp] 56 / 6e-09 AT2G03060 259 / 4e-83 AGAMOUS-like 30 (.1.2) Potri.007G073000 [exp] 54 / 1e-08 AT5G23260 256 / 3e-86 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.019G077200 [exp] 53 / 1e-08 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.008G088200 [exp] 54 / 2e-08 AT2G03060 297 / 4e-98 AGAMOUS-like 30 (.1.2) Potri.012G062300 [exp] 54 / 2e-08 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10039704 pacid=23165012 polypeptide=Lus10039704 locus=Lus10039704.g ID=Lus10039704.BGIv1.0 annot-version=v1.0 ATGGCCCGTCGCAAGTTCTTGATGAAGAAGAAAAAGAAGGTTGGCTCTTACTGTAAGCAGAGAGATGGGATGGTGAAGAAGGCCAATGAGTTGTCTGAGC AATGTGGGGTTGACGTTGGCCTCATCATGTTCTCCCCCAAGGGAAAGTTGACGACTTTCGCCACCAAGGGGAGGATCGAGGATGTGTTCCTTCGTTACAT TGAACGATCAGATGAAATCGAGAATCACGAGAATCTGTACCGTTCACTCAAGCAGCTGAGACATGAAGGTGAAATGCTGGAGAAACTGGATAGGATTGAG GCTCTTGAGGAGGAACTTCAGGAGCTGAACAAACAGCAGAGCCAGAAGGAAGAACAGCTGAAGTGTTACAACTTGGATGTGCAGAAGATAAGGTCAATCA GTGAGGCCTTACTACACCAGCAGTTCCTCACCACTGCAATCCAGAATATCCAACGGCTGAAACTCCAGCAGAACCTCATCAGCCAGATGAAGCTTCGAAA CCCGGAAACTCTCGAGGTGGCTGATTTGACACCAAAGGAATCCATTGAGAAACAGAGGAATCAAGCAGGGGATTATGGAGGAAGCAGTACAGGAGGGCCG CATTTGAGCCTTGAGTTCTTGACAAAGCAGCAGCACTGGAATCTCGGAACCGACCACTGA
AA sequence Show only first row Show all	>Lus10039704 pacid=23165012 polypeptide=Lus10039704 locus=Lus10039704.g ID=Lus10039704.BGIv1.0 annot-version=v1.0 MARRKFLMKKKKKVGSYCKQRDGMVKKANELSEQCGVDVGLIMFSPKGKLTTFATKGRIEDVFLRYIERSDEIENHENLYRSLKQLRHEGEMLEKLDRIE ALEEELQELNKQQSQKEEQLKCYNLDVQKIRSISEALLHQQFLTTAIQNIQRLKLQQNLISQMKLRNPETLEVADLTPKESIEKQRNQAGDYGGSSTGGP HLSLEFLTKQQHWNLGTDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10039704 [exp]	0	1
					Lus10033046 [exp]	4.6	0.7776
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000793 [exp]	5.0	0.8422
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	8.1	0.7977
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	10.4	0.7781
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10009452 [exp]	13.6	0.7209
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	14.5	0.7382
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	15.0	0.7382
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	15.5	0.7382
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	16.0	0.7382
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	16.4	0.7382

Compare expression of checked genes

Lus10039704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.