Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54650 491 / 4e-160 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 483 / 6e-159 AFH3 formin 3 (.1.2) AT3G05470 331 / 1e-99 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G25500 325 / 4e-96 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT5G67470 317 / 2e-94 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT2G43800 296 / 7e-87 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 250 / 3e-71 ATFH8 formin 8 (.1) AT1G59910 246 / 1e-68 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 198 / 6e-53 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 177 / 5e-46 ATFH4, FH4 formin homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018494 [exp] 756 / 0 AT5G54650 464 / 6e-151 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10015091 [exp] 641 / 0 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031585 [exp] 641 / 0 AT4G15200 553 / 0.0 formin 3 (.1.2) Lus10036609 [exp] 484 / 2e-157 AT5G54650 581 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10011168 [exp] 479 / 2e-155 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10043077 [exp] 477 / 2e-154 AT5G54650 636 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10035827 [exp] 469 / 1e-151 AT5G54650 586 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10025195 [exp] 335 / 5e-101 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 336 / 9e-101 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G119900 [exp] 542 / 5e-180 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 523 / 7e-172 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.011G131700 [exp] 510 / 1e-166 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G054900 [exp] 352 / 3e-107 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 339 / 3e-102 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 327 / 2e-97 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.017G009900 [exp] 326 / 2e-97 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.005G026300 [exp] 322 / 1e-95 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.002G240232 [exp] 322 / 1e-94 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 321 / 1e-94 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10039705 pacid=23165348 polypeptide=Lus10039705 locus=Lus10039705.g ID=Lus10039705.BGIv1.0 annot-version=v1.0 ATGGGATCAGGAAGAGCCTGTTACATAACGGTATGTTTGATTCTGCTCTTGTCGGTGGCCGCCACTGGTTATGATTCTGGCAATCGAAATCCTCAGATGA AGGAAGAAATGGCAGAAGAAGCATGGATTTACTGCAGGAAAGGGGTTGGCAAAGATACATTGAAAGATTGTGACTTGTCCAATCTACTGGAATCCACCAG TGAATTTGATTCATCCTTGTTAGCAAACAGAAGAATGCAGAATGCTGTCAGAGTTCTACCTCTTGGAGTGAAGAAGGAAATTATGCATTGCCTGAGAAAG AAAAAACAGATATCTGGTGATTTTGACAATGAAGGCAGCTCTGGAAGCTACTGGCTTATTGACTGTTTACATCTGGTTTTGGATTGGCCTATGACTGATG CACGATATCTGACTGGTTACTATGATGTCCAAACTTCGCTGAAGCTTCATCAGCGACGTGAGCTTGCCTCTGCGGATTCTGAGGACTCTGATTCGGACAC TAGGGAGCGTAAGAAGCATAAAAAGAACGACGTTGAGAAGAAAACAATTATAGCCATTGTTGTAACAACAGTAGCAACCTTCGTGATCGTCGCAGTGCTG TTCTGCTGCTGGCTTCGGTTGAGGAATAGCGAAACGGAAATGAATTATATCGAAGGCAAAAGAGATGAGAGGCCTGTTATCCACTTAAGTGATTCTTGTG CGAACACCTCGCTTGCTACTGCAAATATGGCAAGCTCGAGTACTAAGGATCCGAAGTGTAGTGGTACTGTGACTGAAGCTCCTGTAAGAAACCAGCAGCC TATTATCATGGAGGAAGGACAATCGTCTGAAACGAAACAGGATGCAGGAGATGAGGATGATGATGGTGATGATGAGATTTCACCTCTAAAGCCTCCTCCG GGAAGGCCAGAGCCTCCACCACCGGCCACCCCTCCACCACCACCACCACCTGTACCGCCGCCACCTCGTGCTGCTGCTGCTCCCCCACCACCGCCTCCAA AGCCACGTGCTCCACCTCCCCCGAAATCGAAGTTAAGGCCTTCACCACTGGGACCAAAGCGGGGTGATAACGATGATACAAATGATGCAGATGGTGATGA AGAATCTGAAGTTCCCAAGCCGAAGCTGAAACCTTTCTTTTGGGATAAGGTTCCGGCCAGTCCTAATCACTCCATGGTCTGGCATGAGATTAACGATGGA TCATTCCAGTTTGACGAGGAGATGATAGAGTCATTATTTGGATACACAACGGCTAATAAGAATAAGAATGAGCGTAGGAGAGATTTGGCTGATGTTCCGT ATGTTGGCATTATCGATCCTAGGAAGGCTCAAAATCTGTCTATACTTCTGAGAGCACTGAATGTGACTACTGAAGAAGTTCTTGATGCTCTGCGAGAAGA ACGGTACAAATTCCTTACCTGTCCGTGTAAAAACGCTGTTACAGCTAACGAGCTTCCAGTGGAGCTTCTCCAAACTCTGCTGAAGATGGCACCAACAACA GACGAGGAATTGAAGCTGAGGTTGTTTGCTGGTGAAATCAGTCAGCTTGGGCCTGCAGAACGTTTCCTGAAAGCATTAGTGGAAGTTCCGTCCGCCTTCA AGAGAATCGAATCGCTTCTGTTTATGAGTTCCCTTCAGGAAGAAGTCACCACTCTCAAAGAAGCCTTTGCAACTCTTGAGGCGACGTTTTTCAACTCATA TTATACTCTCTATTCAAAATGCAAGATCGCTAGCAACAAACTCAGAAACAGCAGGCTGTTCCTGAAACTATTGGAAGCAGTTCTCAAAACCGGCAACCGG ATGAACGATGGTACGTACCGCGGTCGCGCGTTAGCATTCAAGCTCGACACGCTCTTAAAGCTCTCCGATGTGAAGGGGACAGACGGTAAGACAACCCTAC TGCACTTTGTTGTCTTAGAAATCATCCGTTCGGAAGGCATACGCGCTGTCCGATCAGCAAAGGAAGACGCAACTGCAAGCGCTGCCTCCAGCGTAATCTC AGACGATTTCAGCGAAGACCCCGATGATCATACAGCAGAGGAGCACTACTGCAACCTCGGCCTCCAAGTGGTTTCGAGCTTAAGCAGCGAATTCGAAGAA GTGAAGAACGCAGCACTGCTAGACGGTGACATGCTGTCATCCACACTGTCCAAACTCAGGCAGTCCTTCACAAAGGCCAAAGGCTTTGTAGAGTCCGACA TGAAGAGCGACGAAGAGAGCGAGTTCTACAGCTCCTTCGTGGCGTTCATGGACCGAGCAGACTCCGACATCTCCTGGCTTTCGGAGGAAGAGAAGAGGAT AACGGCTCTGGTGAAGAGCACGGCGGATTACTTCCATGGCAAGTCAGGTAAAGAAGAAGGGCTTCGGCTCTTCATCATCGTTCGTAGCTTCTTGACGATG CTTGACAAGGCCTGCAAAGAAGTTCAAGATGCCAGAGCGAAGAAACAGATTGCTCTGGTGAAAGTACCTGAAAAGAAAGAACACTACTCTCCAAGTGAAG CTTCGAGTTCGGCAATAAACCAGCAGTTTCAGCAGCAGCCTGAGAATCATCATTGTCTTAAGCGGTTATTTCCAGCCATTGCTGAAAGACAGGATGATTC CTTTAGCTCAGATGATGAAGAATTAGTCGTCCCTCTCTGA
AA sequence Show only first row Show all	>Lus10039705 pacid=23165348 polypeptide=Lus10039705 locus=Lus10039705.g ID=Lus10039705.BGIv1.0 annot-version=v1.0 MGSGRACYITVCLILLLSVAATGYDSGNRNPQMKEEMAEEAWIYCRKGVGKDTLKDCDLSNLLESTSEFDSSLLANRRMQNAVRVLPLGVKKEIMHCLRK KKQISGDFDNEGSSGSYWLIDCLHLVLDWPMTDARYLTGYYDVQTSLKLHQRRELASADSEDSDSDTRERKKHKKNDVEKKTIIAIVVTTVATFVIVAVL FCCWLRLRNSETEMNYIEGKRDERPVIHLSDSCANTSLATANMASSSTKDPKCSGTVTEAPVRNQQPIIMEEGQSSETKQDAGDEDDDGDDEISPLKPPP GRPEPPPPATPPPPPPPVPPPPRAAAAPPPPPPKPRAPPPPKSKLRPSPLGPKRGDNDDTNDADGDEESEVPKPKLKPFFWDKVPASPNHSMVWHEINDG SFQFDEEMIESLFGYTTANKNKNERRRDLADVPYVGIIDPRKAQNLSILLRALNVTTEEVLDALREERYKFLTCPCKNAVTANELPVELLQTLLKMAPTT DEELKLRLFAGEISQLGPAERFLKALVEVPSAFKRIESLLFMSSLQEEVTTLKEAFATLEATFFNSYYTLYSKCKIASNKLRNSRLFLKLLEAVLKTGNR MNDGTYRGRALAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGIRAVRSAKEDATASAASSVISDDFSEDPDDHTAEEHYCNLGLQVVSSLSSEFEE VKNAALLDGDMLSSTLSKLRQSFTKAKGFVESDMKSDEESEFYSSFVAFMDRADSDISWLSEEEKRITALVKSTADYFHGKSGKEEGLRLFIIVRSFLTM LDKACKEVQDARAKKQIALVKVPEKKEHYSPSEASSSAINQQFQQQPENHHCLKRLFPAIAERQDDSFSSDDEELVVPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	0	1
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	2.0	0.9342
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	2.4	0.9323
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	3.9	0.9033
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10028475 [exp]	4.0	0.8856
AT3G59160			F-box/RNI-like superfamily pro...		Lus10003943 [exp]	5.3	0.8984
AT4G23490			Protein of unknown function (D...		Lus10028769 [exp]	7.1	0.8814
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10024487 [exp]	8.1	0.8935
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10023741 [exp]	9.5	0.8832
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	10.6	0.8717
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Lus10030818 [exp]	11.4	0.8937

Compare expression of checked genes

Lus10039705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.