Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32280 185 / 1e-60 Protein of unknown function (DUF1218) (.1) AT4G21310 175 / 1e-56 Protein of unknown function (DUF1218) (.1) AT1G11500 80 / 3e-19 Protein of unknown function (DUF1218) (.1) AT1G05291 77 / 6e-18 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018495 [exp] 253 / 3e-87 AT2G32280 221 / 6e-75 Protein of unknown function (DUF1218) (.1) Lus10038567 [exp] 211 / 6e-71 AT2G32280 218 / 1e-73 Protein of unknown function (DUF1218) (.1) Lus10018386 [exp] 162 / 1e-51 AT4G21310 252 / 5e-87 Protein of unknown function (DUF1218) (.1) Lus10007626 [exp] 162 / 2e-51 AT4G21310 252 / 6e-87 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G040900 [exp] 211 / 9e-71 AT2G32280 240 / 2e-82 Protein of unknown function (DUF1218) (.1) Potri.007G119600 [exp] 207 / 2e-69 AT2G32280 227 / 3e-77 Protein of unknown function (DUF1218) (.1) Potri.004G031200 [exp] 169 / 2e-54 AT4G21310 226 / 1e-76 Protein of unknown function (DUF1218) (.1) Potri.011G031500 [exp] 168 / 1e-53 AT4G21310 258 / 3e-89 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10039706 pacid=23165232 polypeptide=Lus10039706 locus=Lus10039706.g ID=Lus10039706.BGIv1.0 annot-version=v1.0 ATGGGGAAAACAGTAGGCATCTTCATCTGCATCTTGATCGTAGCCATGGACATCGGGGCCGGAATCCTAGCCTTCCAAGCTGAAGAATCACAAAACAAGG TTAAGCACCTGAGGATGTGGATATTCGAGTGCCGGGAACCGAGCAATGCAGCATTCGAGCTCGGGCTAGCGGCAGCCGGACTCCTTGTTCTTGCACATGC CATAGCCAACTTGCTTAGTGGCTGCCTCTGCATCTGCTCCCAAGAGGAGCTCCACAGGGCTTCACCTCACAGGCAGCTCTCTGTAGCTTGCTTCTTCCTC ACTTGGATTGTATTGGCAATGACATTGGCGATGGTGGTAATTGGGACACTGTCAAACAACAAGTCAAGAGCTTCCTGTGGGTTCACAAAACACCATTTCT TCTCCATTGGAGGGATCTTGTGCTTCGTTCATGCCCTCTTTTCTGTTGCTTATTACATCACTGCAACTGCTGCTGCTAGTGATGATGATGACAAGTAG
AA sequence Show only first row Show all	>Lus10039706 pacid=23165232 polypeptide=Lus10039706 locus=Lus10039706.g ID=Lus10039706.BGIv1.0 annot-version=v1.0 MGKTVGIFICILIVAMDIGAGILAFQAEESQNKVKHLRMWIFECREPSNAAFELGLAAAGLLVLAHAIANLLSGCLCICSQEELHRASPHRQLSVACFFL TWIVLAMTLAMVVIGTLSNNKSRASCGFTKHHFFSIGGILCFVHALFSVAYYITATAAASDDDDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32280			Protein of unknown function (D...		Lus10039706 [exp]	0	1
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10017336 [exp]	5.8	0.7323
AT2G32280			Protein of unknown function (D...		Lus10018495 [exp]	12.6	0.5972
AT3G17350			unknown protein		Lus10043098 [exp]	20.3	0.6916
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10018020 [exp]	26.2	0.6504
AT1G69160			unknown protein		Lus10019172 [exp]	29.3	0.7022
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	31.4	0.6997
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10022818 [exp]	39.6	0.6915
AT2G30933			Carbohydrate-binding X8 domain...		Lus10007342 [exp]	47.8	0.6572
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10014172 [exp]	57.2	0.6440
AT5G58160			actin binding (.1)		Lus10007447 [exp]	57.5	0.6417

Compare expression of checked genes

Lus10039706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.