Plant FIBer expression Database

Lus10039708 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11480 227 / 2e-66 eukaryotic translation initiation factor-related (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018497
[exp]
1031 / 0 AT1G11480 242 / 5e-72 eukaryotic translation initiation factor-related (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G119200
[exp]
491 / 7e-168 AT1G11480 145 / 7e-37 eukaryotic translation initiation factor-related (.1.2)
Potri.017G041300
[exp]
480 / 9e-164 AT1G11480 263 / 3e-80 eukaryotic translation initiation factor-related (.1.2)
Potri.011G031900
[exp]
261 / 5e-79 AT1G11480 318 / 9e-101 eukaryotic translation initiation factor-related (.1.2)
Potri.004G169100
[exp]
50 / 2e-06 AT4G38710 149 / 1e-40 glycine-rich protein (.1.2)
Potri.009G130200
[exp]
50 / 3e-06 AT4G38710 192 / 1e-56 glycine-rich protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10039708 pacid=23165049 polypeptide=Lus10039708 locus=Lus10039708.g ID=Lus10039708.BGIv1.0 annot-version=v1.0
ATGTCGAAGAAGAAAGTTTCCTCGACTATGTCCTTGAAGGACTTCCACGGCGGCTCGATTCCTTCTGATCTTCCTTTGCCCTCTGCTCCCGGAGTCGTGG
CAAGACCTGGTTCAGAACGTAATCCATCCACAGCTTGGGGAAATAATTTGATGAGGACGGATCTCCGACCGAGGCCAAAGTCGTCTGGAGCATCTCGTGG
ATTCGATGAGAAAGCGTCGCTTCTCTCTCACCCTTCTCCTATAGGCCGAAACTTTGACGAGGATGAGCGCAAGCCATTAGATGGATCATCTGCTCCACGC
CGAACCATTAGCGACGAGAGCATTCAGAGGTCTGCTGTAGTTCAGCAGGAAGTGAAGCTGGACTATGCTTCTTCAGTGAGGCTTCAGGATCGACCATTGT
CAAGTCCAGGGATCCAGTCTTCTAGTCTGGGAACTGGTCCGACTGGATTAAGAACCGGGGCTGGATCTTCTGGTAATGGTCAGGGTGTCAACAGTTTAAA
GGGTTCAAGTGTTTACAGTAGCCAGGAAGTGAACAACAATCCGCCGAATGCGTGGGGTCTGAAAAAAGATGTCAATCCCAATGCCAATGAGTTCAGTGCT
CCATCACCGTTGGGGTCAAGTTCTGTCTCCAAAATAGCTCAAGCAAGTGCCATTGACAAGGTATCTTCTGGAATGTGGCAGTCGAAGAATCCTGCCAACT
TCTTACCTCATCTGCTGTATTCAAAGGATAACGTTGTAACACATAATGGGGGATTGAGTGGTCAGATGGAGAGGGGCGGTTATGATGCCTCCCATGCAGT
TGTAACTGAAACTGTGACCGAAGATAGAAGCCGAGGATTGGGAAGGGAATATCCTAGCTATGGAATAGATCATCAGTCTCAAAGGCCTAGAGAAGATGTG
CTTCAGCTCCCACAAACTATACTTCCTGGTGTCTCGGAGCAGCTTAAACCAAAGCTATACCAAAGATCGGCATCTTTGGAAACATCAAACTTGGAATACA
GACAGGGTTACCAGCATGTTACACAGCCAGGTCAGGTTGAAACTGTTCATGGAATGCATGGAGAAGCAATTTCCCCGAAACAAGGGCCAACTGGTGGTAT
GGCTAACAACAGACCAGCTGATAAGCCAGTTGAGCGTCCGAAACTGAACCTGAAGCCACGATCCCAACCTCTTGAGAAATCTGACGGAAATGCAGTGAAA
GAAAGGTCATTGTTTGGTGGTGCTCGACCACGGGAGCTGGTTCTCAAAGAAAGGGGCATAGATGACATCGAAATCACTAAGCTTGAACTCAGCCCTTCGC
CTAATAGGCCCAATTCCTCGAAGAGCGAATCGAGGCCAGCAGAGCAGATTGCGCCCATCGCAGGTCAGGCTCCTACCAAGACCGAGAGTCGCACTCCGAC
CAACAGGAGGACCGGAGGAAGGGACTTCGAAAGGAAAGATCAGAAGCCGTCCGCCGAAACAGAGAAACCCGATCAAGAGAGGAAGAGCTGGCGTAACGAT
AAGTGGAAGAGCAACAAAGAGATCGTCAAAGAACAACGTCCTGAGCCTGAAACCTGGCGCAAACCCGTCGAAGAAGAGCCAAAGCCCGCACCAGGAAGCG
GCAAACTGGTCTCTGCCCTCGAGCTCGCTCGAGCATTTTCGAAGTCAGTTTCAGTTCCGAAAACTAACTCGCCCCATCGAGGACCGGTCAGGCACAGCGA
CAACAACGGCAGTCAGGTTCCGTTTTCTCGATTGACAGAAACTCGTGAACTCCACCACCCAGCACCAGCGACAGCGAGGCACCGGCTGAATGGTTACTAG
AA sequence
>Lus10039708 pacid=23165049 polypeptide=Lus10039708 locus=Lus10039708.g ID=Lus10039708.BGIv1.0 annot-version=v1.0
MSKKKVSSTMSLKDFHGGSIPSDLPLPSAPGVVARPGSERNPSTAWGNNLMRTDLRPRPKSSGASRGFDEKASLLSHPSPIGRNFDEDERKPLDGSSAPR
RTISDESIQRSAVVQQEVKLDYASSVRLQDRPLSSPGIQSSSLGTGPTGLRTGAGSSGNGQGVNSLKGSSVYSSQEVNNNPPNAWGLKKDVNPNANEFSA
PSPLGSSSVSKIAQASAIDKVSSGMWQSKNPANFLPHLLYSKDNVVTHNGGLSGQMERGGYDASHAVVTETVTEDRSRGLGREYPSYGIDHQSQRPREDV
LQLPQTILPGVSEQLKPKLYQRSASLETSNLEYRQGYQHVTQPGQVETVHGMHGEAISPKQGPTGGMANNRPADKPVERPKLNLKPRSQPLEKSDGNAVK
ERSLFGGARPRELVLKERGIDDIEITKLELSPSPNRPNSSKSESRPAEQIAPIAGQAPTKTESRTPTNRRTGGRDFERKDQKPSAETEKPDQERKSWRND
KWKSNKEIVKEQRPEPETWRKPVEEEPKPAPGSGKLVSALELARAFSKSVSVPKTNSPHRGPVRHSDNNGSQVPFSRLTETRELHHPAPATARHRLNGY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11480 eukaryotic translation initiat... Lus10039708
[exp]
0 1
AT5G22040 unknown protein Lus10008373
[exp]
1.0 0.9445
AT3G13920 RH4, TIF4A1, EI... eukaryotic translation initiat... Lus10037620
[exp]
2.0 0.9312
AT1G04300 TRAF-like superfamily protein ... Lus10021218
[exp]
3.2 0.9259
AT5G53000 TAP46 2A phosphatase associated prot... Lus10041409
[exp]
3.3 0.9052
AT5G37370 ATSRL1 PRP38 family protein (.1.2.3.4... Lus10031361
[exp]
3.9 0.9283
AT5G16260 ELF9 EARLY FLOWERING 9, RNA binding... Lus10020230
[exp]
5.2 0.8875
AT1G04300 TRAF-like superfamily protein ... Lus10022208
[exp]
5.3 0.9167
AT5G50970 transducin family protein / WD... Lus10043205
[exp]
6.0 0.8826
AT5G20350 TIP1 TIP GROWTH DEFECTIVE 1, Ankyri... Lus10008037
[exp]
6.5 0.8987
AT5G62430 DOF CDF1, AtDof5,5 cycling DOF factor 1 (.1) Lus10005677
[exp]
7.9 0.8843

Lus10039708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.