Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22104 409 / 2e-138 Phototropic-responsive NPH3 family protein (.1) AT3G19850 255 / 4e-78 Phototropic-responsive NPH3 family protein (.1) AT1G50280 210 / 2e-61 Phototropic-responsive NPH3 family protein (.1) AT5G66560 203 / 1e-57 Phototropic-responsive NPH3 family protein (.1) AT3G08570 191 / 1e-53 Phototropic-responsive NPH3 family protein (.1) AT3G44820 189 / 9e-53 Phototropic-responsive NPH3 family protein (.1) AT3G50840 186 / 3e-52 Phototropic-responsive NPH3 family protein (.1) AT5G03250 186 / 4e-52 Phototropic-responsive NPH3 family protein (.1) AT1G03010 177 / 1e-48 Phototropic-responsive NPH3 family protein (.1) AT5G48800 174 / 2e-47 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018499 [exp] 934 / 0 AT3G22104 420 / 2e-142 Phototropic-responsive NPH3 family protein (.1) Lus10034200 [exp] 216 / 3e-63 AT3G19850 390 / 1e-129 Phototropic-responsive NPH3 family protein (.1) Lus10030554 [exp] 202 / 2e-57 AT3G19850 414 / 5e-138 Phototropic-responsive NPH3 family protein (.1) Lus10012901 [exp] 197 / 1e-55 AT3G19850 415 / 3e-138 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 185 / 3e-51 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 184 / 5e-51 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 183 / 1e-50 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 183 / 2e-50 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 177 / 2e-48 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118800 [exp] 600 / 0 AT3G22104 505 / 1e-175 Phototropic-responsive NPH3 family protein (.1) Potri.017G041600 [exp] 582 / 0 AT3G22104 488 / 4e-169 Phototropic-responsive NPH3 family protein (.1) Potri.004G030600 [exp] 389 / 4e-130 AT3G22104 313 / 1e-100 Phototropic-responsive NPH3 family protein (.1) Potri.011G032100 [exp] 387 / 5e-129 AT3G22104 309 / 4e-99 Phototropic-responsive NPH3 family protein (.1) Potri.010G170900 [exp] 297 / 1e-93 AT3G19850 426 / 2e-143 Phototropic-responsive NPH3 family protein (.1) Potri.008G085500 [exp] 274 / 4e-85 AT3G19850 449 / 2e-152 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 199 / 3e-56 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 194 / 9e-55 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 191 / 1e-53 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 184 / 7e-51 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10039710 pacid=23165128 polypeptide=Lus10039710 locus=Lus10039710.g ID=Lus10039710.BGIv1.0 annot-version=v1.0 ATGATTTCTTCATACTCAGGAAGACTAAGCAAGCTGTTTGGGAAATCAACTTATGGAGCTCAGAATCTGAAGGTGTTGTTCAATGATTTCCCAGGAGGAT CCGAAGGATTCGAGCTGATGTTAAGATTCTGCTACAACAATGGTAGAATAGACATAACTCCTTCCAACTTAACCTTGCTGCATTCTGCTGCAAAGTTCAT GGAGTTGACCGTTGACTCATCACCATCTGGCCTCAACTTGCTCGAACTCACCGAGAAATCGCTTCGAGAGCAGATCGGTTACTGGACTTGGTCCGATCTC TTGCTCACCTTAAAGCATTGCCAAGACTTGGACCCAAATAATTACTCTTCTGCCATTGTTGAGAAGTGTATAGATTCACTCATTGGGAGAATGGTTTTGT GTAATGATCATTCCAGTCCATGCCCTTCCACTTCTTCTTCGCTGGATAGCTCCGGTACGGTTCGAATTTCGTGTGATAGTAGAAGCACTGAGAGTACTCT GAAGACCAGCTTATCTACTAGAGGAGGAACTACTTGGTGGTTTGAGGATCTGTCTGGTTTGACTTTGACTTTTGTTGAGATTCTTGTGAAGTCAATGGTA CTATCCAAGAAGTTTGACCATGGAACTATCAGTAGGTTCCTCTTTTACTACCAGAAATCAAAGTGTGATGAGAACGAGAAGCTCAAGACGGTCGAGTCGG TCATTGACTTGCTCCACATACTCGACTCGAGTTCTGTTCCTTGCAAGAGCTTATTTGGTTTGCTTCGAGTTGCTTCGAATGCAAGCAAATGCAGTAGAAG CAAGCTGGAAGGCATGATAGGTTCTCAGCTGGACCAAGCAACTCTGGATAATCTCCTCATTCCATCCCGGAGTGGGGGTTCGAAAAATTGTCTGTATGAT GTGAATGTTGTTCTGAGGTTGGTAAAGTCGTTTCTCCGCGAGGGAAGAAGGTTTCGAGCGTATCCAAATCGATTGAAGAAGGTTTCGAGTTTGATGGATA TGTACATTGCTGAAGTGGCACCTGACCCTTGTCTGAAACCTTCAAAGTTTCTAGCTTTAGCCATGGTTTTGCCCGATTCTGCTCGTGACTCGTACGATGA CATGTACCGCGCAATGGAAATGTATCTTGAGGTGCACAGTGGAATCTCTGATGACGAAAAGATGAAGATATGCTGTGCACTAAACTACGAGAAGGTATCG ACCGAAGTATGCATGCAGATTTCTCAGAACAAGAAGTTCCCATCAAGAACAGCAATCCAAGCTTTGATGTCTCAGCAAGTGAAGCTCAATAACCTGTTAC AAGCTCAAGAACCTGTTACAAGCTTAGGCGAAAAAACAGATCCCAAGGCGAAACAGACCGAGGACCAAATCGTGCTGTACGCTGCTAAGCTTGAGTTTTC GAGTGATAACGAGCGGCTTAGAGCACATTTGCAAGGGATGCAGTGGAGGGTGATGGAACTGGAGAAAGTGTGCAGGAAGATGCAGACACAGATGACAAAG ATCGTGCGATCGAAGACTACTCCGAATCGTAGCAACTCGCGATCTCTACCAAAGTTGTGTTCTTGA
AA sequence Show only first row Show all	>Lus10039710 pacid=23165128 polypeptide=Lus10039710 locus=Lus10039710.g ID=Lus10039710.BGIv1.0 annot-version=v1.0 MISSYSGRLSKLFGKSTYGAQNLKVLFNDFPGGSEGFELMLRFCYNNGRIDITPSNLTLLHSAAKFMELTVDSSPSGLNLLELTEKSLREQIGYWTWSDL LLTLKHCQDLDPNNYSSAIVEKCIDSLIGRMVLCNDHSSPCPSTSSSLDSSGTVRISCDSRSTESTLKTSLSTRGGTTWWFEDLSGLTLTFVEILVKSMV LSKKFDHGTISRFLFYYQKSKCDENEKLKTVESVIDLLHILDSSSVPCKSLFGLLRVASNASKCSRSKLEGMIGSQLDQATLDNLLIPSRSGGSKNCLYD VNVVLRLVKSFLREGRRFRAYPNRLKKVSSLMDMYIAEVAPDPCLKPSKFLALAMVLPDSARDSYDDMYRAMEMYLEVHSGISDDEKMKICCALNYEKVS TEVCMQISQNKKFPSRTAIQALMSQQVKLNNLLQAQEPVTSLGEKTDPKAKQTEDQIVLYAAKLEFSSDNERLRAHLQGMQWRVMELEKVCRKMQTQMTK IVRSKTTPNRSNSRSLPKLCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10039710 [exp]	0	1
AT2G24230			Leucine-rich repeat protein ki...		Lus10036608 [exp]	5.3	0.7133
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10041419 [exp]	14.9	0.6798
AT5G02440			unknown protein		Lus10016560 [exp]	15.4	0.6335
AT5G06270			unknown protein		Lus10021305 [exp]	16.7	0.6652
AT5G54980			Uncharacterised protein family...		Lus10021788 [exp]	18.2	0.6452
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10014123 [exp]	23.1	0.6753
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	25.1	0.6271
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	28.1	0.6462
AT1G17350			NADH:ubiquinone oxidoreductase...		Lus10035323 [exp]	33.6	0.4863
AT1G80500			SNARE-like superfamily protein...		Lus10041670 [exp]	35.7	0.6355

Compare expression of checked genes

Lus10039710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.