Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16740 409 / 4e-136 ATTPS03 terpene synthase 03 (.1.2) AT3G25810 394 / 6e-130 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G24210 393 / 2e-129 AtTPS10 terpene synthase 10 (.1) AT3G25830 387 / 7e-127 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 387 / 7e-127 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT4G16730 374 / 8e-123 AtTPS02 terpene synthase 02 (.1) AT1G61680 232 / 3e-68 ATTPS14 terpene synthase 14 (.1.2) AT5G23960 225 / 7e-66 ATTPS21 terpene synthase 21 (.1.2) AT1G70080 223 / 2e-64 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 220 / 2e-63 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018501 [exp] 1022 / 0 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2) Lus10018500 [exp] 723 / 0 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10006356 [exp] 370 / 4e-120 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10006355 [exp] 359 / 1e-115 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10012312 [exp] 357 / 3e-115 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10033643 [exp] 337 / 2e-107 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10007624 [exp] 322 / 1e-102 AT4G16740 334 / 8e-108 terpene synthase 03 (.1.2) Lus10001110 [exp] 319 / 2e-101 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10025922 [exp] 317 / 4e-100 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118600 [exp] 582 / 0 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 496 / 1e-169 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G023006 [exp] 452 / 1e-152 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 446 / 1e-150 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G022338 [exp] 419 / 9e-140 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308300 [exp] 412 / 5e-137 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 408 / 3e-135 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.011G031800 [exp] 369 / 2e-120 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 367 / 1e-118 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.019G023020 [exp] 345 / 3e-114 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10039713 pacid=23165157 polypeptide=Lus10039713 locus=Lus10039713.g ID=Lus10039713.BGIv1.0 annot-version=v1.0 ATGGGTTCGAGCCTCCACAACATGTCGTCGAACCGCAGCATCATCGCCCTTCATCGCCGTCGACTTCCTTCTGCATCACGCATACCAACCGGCAGTGCTC GTCCGCGAGTAGTAGCAGCAGCGGCAGCAGCTCATCTCCCTACTCAAGCATCGTCGGATTCACGAATTCGACGGTCCGCCAATTACAAACCGACGTCTTG GGATTACGAGTTCCTACAGTCCTTCGAGGTCGATGACATCGACAATGATGAGTTGTACAAAGGCAGGGTAACAATGCTGGAGAGGAATCTGAAATTGAAA TTAGCCAGTGTCAAAATGGTGGAGGATGTCGTCGACGGGCTAGAATTGATCGATGATATACAGAGGTTAGGATTGGCACACTGCTTCGAAAACGAAATAC GAGAAGCTCTCGACAGACTTCTCGACAATGGAGGGTGTCAGGCCTTGGCGAACAAGTACCCCTCTGTCGTCCGCAACGTCGCTCTAGGGTTCAGACTCCT CAGACAAAATGGTTACCGTGTCTCTCAAGACGTGTTCAAAGAGTTTCTCAAAGGAAACAACCACGACGATTGGGATGTGAAAGACATGTTGAGCTTGTAC GAAGCTTCGTACCTCGCCCACGAAGGCGAATACATCTTGGACGAGGCTAGAGAACGTACGACGAAGTATCTCCACAACTTTTTGCTACAAGAAAATACGA CCGTTAAAGAGCTAGTACGCCATTCTCTCGAATTTCCACTTCATCGGAGGATGGAGATGCTAGACGCGAGATGGTACATCGAATCATACAACAAGATCAA AGTGGCGAAGTACCCTGCATTGGTCGAGCTGGCCACGTTGGAGTTCAACATGGCTCAGTCGGTCCTCCAACGTGACCTAAAGGACATGTCGAGGTGGTGG AGCAGCTTGGGGCTAGCAAAGGAGCTGAGTTTCAGCAGGGACAGATTGGTGGAGTGTTTTTTCTGGACAGTTGGAATGATGTTCCAGCCACGGTTCAGCC TGTGTCGAAAGGGGTTGACCAAAGTGACATCCTTTATTACGACGATCGACGATATCTATGATGTTTATGGCACTCTGGAGGAGCTGGAGCTGTTTACCGA TGCAGTTGAAAGATGGGACATAAATGCAGTGGACACTTTGCCGGACTACATGAAGCCATGCTTCCTAGCTTTCCACAACACTGTTACCGAACTATCTCAC CATACAAATGGGCATAACATCTTACCGCACCTCACCAAAGTGTGGACAGGTATGCTCAAGGCATTCTTGCAGGAAGCAGAGTGGAGCTACGACAATAAGA AGCAGAGTAGTGGACCACCAACGTTTACAGAGTACATGGAAAATGCATGGAGATCTGTATCAGGAATAGTGATTCTTGTCCACACGTATTGTCTTCTCAA CGACCACGACGGTTTCACAGAGGACGGTTTGGAGAGCCACTTGATGAGCTACGACAAAATCTTTCGTTGGCCGTCGGTTGTTTTCCGGCTTTGCAACGAC CTCGCAACTTCACCGAGCGAGATAGCGAGAGGGGAGACGGTGAACGCAGTGTCGTGCTACATGAACGAGAATGGAGTCAGCGAAGAGGAGGCAAGGAAGC ACTTGAACTCCATGATCGACCAAGCTTGGAAGAATATGAACCAAGAGCTACTGGTATTTTCATCATCGCCAATTTGTATGGATGATGAAGATGGTAACTC GTCACCTATGGTCGCGAACTCGTTTCTAAAATCGGCAGTCAACCTAGCGAGGATCGCTCATCATACTTACCAACGTGGAGACAGCCATGGCGATCCAGAC GCTGGATCCAAAAAGACAGTCTTCTCCCTCATCTTTCAACCCATCCACGTAAACTCTTCAAGAATCTAG
AA sequence Show only first row Show all	>Lus10039713 pacid=23165157 polypeptide=Lus10039713 locus=Lus10039713.g ID=Lus10039713.BGIv1.0 annot-version=v1.0 MGSSLHNMSSNRSIIALHRRRLPSASRIPTGSARPRVVAAAAAAHLPTQASSDSRIRRSANYKPTSWDYEFLQSFEVDDIDNDELYKGRVTMLERNLKLK LASVKMVEDVVDGLELIDDIQRLGLAHCFENEIREALDRLLDNGGCQALANKYPSVVRNVALGFRLLRQNGYRVSQDVFKEFLKGNNHDDWDVKDMLSLY EASYLAHEGEYILDEARERTTKYLHNFLLQENTTVKELVRHSLEFPLHRRMEMLDARWYIESYNKIKVAKYPALVELATLEFNMAQSVLQRDLKDMSRWW SSLGLAKELSFSRDRLVECFFWTVGMMFQPRFSLCRKGLTKVTSFITTIDDIYDVYGTLEELELFTDAVERWDINAVDTLPDYMKPCFLAFHNTVTELSH HTNGHNILPHLTKVWTGMLKAFLQEAEWSYDNKKQSSGPPTFTEYMENAWRSVSGIVILVHTYCLLNDHDGFTEDGLESHLMSYDKIFRWPSVVFRLCND LATSPSEIARGETVNAVSCYMNENGVSEEEARKHLNSMIDQAWKNMNQELLVFSSSPICMDDEDGNSSPMVANSFLKSAVNLARIAHHTYQRGDSHGDPD AGSKKTVFSLIFQPIHVNSSRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10039713 [exp]	0	1
AT1G17960			Threonyl-tRNA synthetase (.1)		Lus10030644 [exp]	1.0	0.9948
AT5G41020	MYB		myb family transcription facto...		Lus10022932 [exp]	2.0	0.9895
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Lus10002659 [exp]	2.4	0.9851
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10001914 [exp]	3.5	0.9760
AT5G52390			PAR1 protein (.1)		Lus10016450 [exp]	4.2	0.9697
					Lus10020641 [exp]	5.0	0.9721
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Lus10042111 [exp]	5.2	0.9466
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10022114 [exp]	6.5	0.9604
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10027372 [exp]	6.5	0.9414
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006244 [exp]	8.9	0.9589

Compare expression of checked genes

Lus10039713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.