Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12210 499 / 7e-180 AtRGTB1 RAB geranylgeranyl transferase beta subunit 1 (.1.2) AT3G12070 489 / 8e-176 AtRGTB2 RAB geranylgeranyl transferase beta subunit 2 (.1.2) AT2G39550 138 / 8e-38 GGB, ATGGT-IB, PGGT-I GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) AT5G40280 97 / 2e-22 ATFTB, WIG, ERA1 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018502 [exp] 607 / 0 AT5G12210 510 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Lus10040303 [exp] 121 / 3e-31 AT2G39550 436 / 4e-152 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10032149 [exp] 95 / 1e-21 AT5G40280 465 / 1e-161 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10014536 [exp] 72 / 7e-14 AT5G40280 422 / 1e-144 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10023422 [exp] 60 / 5e-10 AT2G39550 175 / 1e-52 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10000944 [exp] 42 / 7e-05 AT2G39550 76 / 2e-17 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10017310 [exp] 40 / 0.0007 AT2G39550 86 / 4e-23 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012500 [exp] 535 / 0 AT5G12210 525 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Potri.008G054500 [exp] 144 / 3e-40 AT2G39550 481 / 8e-171 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.017G073200 [exp] 108 / 1e-26 AT5G40280 511 / 5e-180 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.004G132500 [exp] 46 / 3e-05 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.010G206001 [exp] 0 / 1 AT2G39550 260 / 6e-86 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10039714 pacid=23165248 polypeptide=Lus10039714 locus=Lus10039714.g ID=Lus10039714.BGIv1.0 annot-version=v1.0 ATGGGGGAGTTAGCATTAGCAGCTGATAAGCATGTGAAATACATCCTGCAAGTAGAGAAGAAGAAGGATAGTTTTGAATCTGCTGTAATGGAGCACTTAC GAATGAACGGGGCGTATTGGGGGTTGACCACATTGGATCTGCTAGGAAAGCTTGATGTAGTGGATTCGAATGAGATTCTCGAATGGATCATGAAGTGCCA ACATGAGTCTGGTGGATTTGCTGGTAATATTGGGCATGACCCTCATATACTGTACACCCTCAGTGCCATACAGGTTCTGGCCCTTTTTGACAAACTCGAC GTTCTTGATATCGACAAAGTTTCGAATTATATTGCTGGACTGCAAAATGAGGATGGATCCTTTTCTGGCGACATTTGGGGAGAAGTTGATACACGGTTCT CTTACATTGCAATATGCAGTCTTTCGATAATAAAACGCCTGGACAGAATAAACGTGGAGAAGGCTGTGAGCTACATCATAAGCTGCCAAAACGTTGACGG TGGATTTGGATGCACTCCTGGTGGCGAGTCTCATTCCGGACAGATATTCTGCTGTGTGGCTGCCCTTGCCATTACTGGAGCTCTACACTGCATCGACAAA GACCTCCTAGGATGGTGGCTGTGTGAACGACAGGTGAAATCCGGCGGTCTTAATGGCCGACCTGAGAAGCTTCCAGATGTTTGCTACTCGTGGTGGGTTC TCTCTAGCTTGACGATGATCGATAGAGTTGACTGGATTAACAAAGATAAACTGGCTAAGTTCATTTTGAACTGTCAGGACACGGAGAAAGGAGGAATTTC GGACAGGCCAGATGACGCGGTCGACATCTTCCATACATATTTCGGAGTTGCTGGATTGTCTCTGCTCGAGTATCCGGGAGTGAAGGCTATCGATCCAGCT TATGCATTGCCGGTCTACATCGTGGATCGACTCTTCTTTGGCAACAAATGA
AA sequence Show only first row Show all	>Lus10039714 pacid=23165248 polypeptide=Lus10039714 locus=Lus10039714.g ID=Lus10039714.BGIv1.0 annot-version=v1.0 MGELALAADKHVKYILQVEKKKDSFESAVMEHLRMNGAYWGLTTLDLLGKLDVVDSNEILEWIMKCQHESGGFAGNIGHDPHILYTLSAIQVLALFDKLD VLDIDKVSNYIAGLQNEDGSFSGDIWGEVDTRFSYIAICSLSIIKRLDRINVEKAVSYIISCQNVDGGFGCTPGGESHSGQIFCCVAALAITGALHCIDK DLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLTMIDRVDWINKDKLAKFILNCQDTEKGGISDRPDDAVDIFHTYFGVAGLSLLEYPGVKAIDPA YALPVYIVDRLFFGNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12070		AtRGTB2	RAB geranylgeranyl transferase...		Lus10039714 [exp]	0	1
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Lus10018502 [exp]	2.6	0.9023
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10015038 [exp]	10.6	0.8822
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10018004 [exp]	13.8	0.8943
AT3G08030			Protein of unknown function, D...		Lus10016393 [exp]	26.6	0.8889
AT2G24400			SAUR-like auxin-responsive pro...		Lus10035716 [exp]	29.3	0.8869
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10038531 [exp]	30.4	0.8832
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10000973 [exp]	30.8	0.8705
AT3G05390			unknown protein		Lus10029907 [exp]	38.0	0.8846
AT4G33590			unknown protein		Lus10041131 [exp]	45.2	0.8821
AT3G21710			unknown protein		Lus10027176 [exp]	48.1	0.8747

Compare expression of checked genes

Lus10039714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.