Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03210 441 / 1e-157 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT5G13870 330 / 9e-114 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT2G06850 314 / 3e-107 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT3G23730 308 / 6e-105 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G65730 306 / 2e-104 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT4G37800 303 / 3e-103 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT4G14130 297 / 8e-101 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57560 291 / 2e-98 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G25810 288 / 4e-97 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57550 286 / 8e-97 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018503 [exp] 606 / 0 AT4G03210 439 / 9e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10031586 [exp] 533 / 0 AT4G03210 446 / 9e-160 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10033755 [exp] 475 / 5e-170 AT4G03210 340 / 5e-117 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10011052 [exp] 331 / 2e-113 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10003022 [exp] 329 / 4e-113 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10040121 [exp] 325 / 1e-111 AT5G13870 493 / 5e-178 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10030923 [exp] 319 / 3e-109 AT5G13870 491 / 3e-177 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10039643 [exp] 296 / 3e-100 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10011597 [exp] 296 / 3e-100 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G125000 [exp] 499 / 2e-180 AT4G03210 450 / 3e-161 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.013G152400 [exp] 496 / 2e-179 AT4G03210 442 / 2e-158 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.003G159700 [exp] 322 / 2e-110 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.007G008500 [exp] 321 / 3e-110 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.001G071000 [exp] 321 / 4e-110 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G140300 [exp] 316 / 3e-108 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.013G005700 [exp] 301 / 1e-101 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.011G077320 [exp] 298 / 6e-101 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.006G170100 [exp] 294 / 1e-99 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G169900 [exp] 294 / 1e-99 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10039715 pacid=23165312 polypeptide=Lus10039715 locus=Lus10039715.g ID=Lus10039715.BGIv1.0 annot-version=v1.0 ATGGCGGTCTCAATCTCCAGAGCTTCCCTTCAGTTAGCACTTTTCGTTGGATTATCCACTCTAGCTATAGTCAGTTCAGCTCCCGCCAAGTTTGATGACC TCTTCCAACCCAGCTGGGCTTTTGATCACTTAGTCTATGAAGGAGAACAGCTCAAGCTCAAACTTGATAACTATTCCGGATCCGGGTTTCAATCGAAGAG CAAGTACCTATTCGGAAAGGTGACGGTTCAGATTAAGCTCGTGGAAGGCGATTCCGCCGGAACTGTTACCGCCTTCTACATGTCGTCGGAGGGACCGACT CATAACGAGTTCGATTTCGAGTTCCTGGGTAATAAAACAGGAGAGCCGTACGTCGTCCAGACGAATGTGTTCGTCAATGGCGTCGGCAACAGAGAGCAAA GGTTGAACCTTTGGTTCGATCCAACCAAGGATTTCCATAGCTACTCCATCTTCTGGAACCCCAGTCAAGTCATATTTCTAGTGGACGACACTCCGATAAG GCAGCACACGAACTTGGAGCACAAGGGGATCCCATTCCCGAAAGACCAACCCATGGGAGTGTACAGCTCGATCTGGAACGCCGACGATTGGGCGACCCAG GGGGGTTTGGTCAAGACGGATTGGAGCCACGCGCCGTTCGTCGCGTCGTATAAGGGATTTGAGATCGATGCTTGTGAAAGTCCGGCGACGGCGATGTCAG CGGCTGATCTGACGAAGAAGTGCACCAGTAGCGGCGAGAAGAAGTACTGGTGGGATGAGCCGACTTTGAGTGGGATGAATGTTCATCAGAGTCATCAGTT GCTTTGGGTTAAGAAGAATCATATGATTTACGATTACTGTAGTGATAACTCGAGGTTCCCTGTTACACCTGAGGAGTGTCGGCATCACCGCCATTGA
AA sequence Show only first row Show all	>Lus10039715 pacid=23165312 polypeptide=Lus10039715 locus=Lus10039715.g ID=Lus10039715.BGIv1.0 annot-version=v1.0 MAVSISRASLQLALFVGLSTLAIVSSAPAKFDDLFQPSWAFDHLVYEGEQLKLKLDNYSGSGFQSKSKYLFGKVTVQIKLVEGDSAGTVTAFYMSSEGPT HNEFDFEFLGNKTGEPYVVQTNVFVNGVGNREQRLNLWFDPTKDFHSYSIFWNPSQVIFLVDDTPIRQHTNLEHKGIPFPKDQPMGVYSSIWNADDWATQ GGLVKTDWSHAPFVASYKGFEIDACESPATAMSAADLTKKCTSSGEKKYWWDEPTLSGMNVHQSHQLLWVKKNHMIYDYCSDNSRFPVTPEECRHHRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10039715 [exp]	0	1
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10018503 [exp]	1.0	0.8946
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	2.8	0.8693
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Lus10022248 [exp]	4.2	0.8064
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10017507 [exp]	5.0	0.8218
AT5G14370			CCT motif family protein (.1)		Lus10014886 [exp]	5.2	0.8567
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026815 [exp]	6.3	0.8288
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10042070 [exp]	7.1	0.8020
AT5G59250			Major facilitator superfamily ...		Lus10040772 [exp]	7.2	0.7932
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10028360 [exp]	8.8	0.8167
					Lus10033157 [exp]	15.2	0.7698

Compare expression of checked genes

Lus10039715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.