Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018543 [exp] 100 / 3e-23 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030016 [exp] 94 / 5e-21 AT2G32970 799 / 0.0 unknown protein Lus10029998 [exp] 88 / 6e-19 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10035617 [exp] 82 / 3e-18 ND / Lus10029986 [exp] 81 / 1e-16 AT1G20920 347 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10007227 [exp] 75 / 1e-15 ND / Lus10037440 [exp] 71 / 2e-13 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10027471 [exp] 66 / 5e-12 AT5G22730 55 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10018544 [exp] 61 / 1e-10 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039716 pacid=23164992 polypeptide=Lus10039716 locus=Lus10039716.g ID=Lus10039716.BGIv1.0 annot-version=v1.0 ATGGAAAAGCTGAAGCTCCTTCTCGGCGAGAAAGAAAATTGCACCGTTTCCTCCGTTGTTGAGCAGCTTCTGGTTTTAGCGTTGAACAGGAAGGCAGAAG AGATCTCTATAGATCTTCACAACAAGTGTAACTACAGACTCTGCTTGGCCTTGGAATCACTCTCCAATTCCACCATGACGAGCCTCCACTTCAGAAATCT GGCTCTCGTCTGTAACAATGGTGATCTTCATTCTCTTTCTCTGAAGTCTCTGCGATTCCTGCATCTAAATTATGTTCAAAAACAGATGATCGGGACGCTC GGAATCACTTGTTGTGAGGACCTCAAGGAAATTGAGATTGCAGCTCCTCGACGCCAAACTCTCGATCTTCCTCCGATCGAAGGAGTCTCGAGGATTGTAA TAATTGCTCCTCAGCTCAATCATTTGACAGCTTCACTTCATAATTACTTTTGTTATAATTATATTGTCCCAATGATTCCGGGCCTCCAGCTTCTGAAATC CTTACAACTGTATGCACCTCGGTCTGAGAAGAAGCTGAAAATTTCGAGTCCCAAACTCGAGAAATTCGAGCTATGCTCAATGCCGGGATTGGAGGAGTTC GAGGTAGATGGTGGGCCCGATTTGTCGAACTTCATCCTGCGGTTCCACGGTAGCAATGCATATAGCTTAAAGAAATGTGAAATCCGGAATGCTGCAGCCT GTTGCTTATGGGAGGTTGATTGCAGGATGCAGTGTTATAAATCTAGTGATGCATGCCGATGTTACTCAGAATTGAAGAGTTTTCTTGCCAAATTCAGCCA CCAATTTCACACTGTCAACTTTTCATGCCACTGCACCCCGGTTCTAAATACGAGAGGAAGGCGCTACCAGTTTTTCTATCACGATATATGGGGGGCGAAA GTAGACAAGAGCCTAATGAGAATCGTTACAGCTGGGAACGCGAGCTGA
AA sequence Show only first row Show all	>Lus10039716 pacid=23164992 polypeptide=Lus10039716 locus=Lus10039716.g ID=Lus10039716.BGIv1.0 annot-version=v1.0 MEKLKLLLGEKENCTVSSVVEQLLVLALNRKAEEISIDLHNKCNYRLCLALESLSNSTMTSLHFRNLALVCNNGDLHSLSLKSLRFLHLNYVQKQMIGTL GITCCEDLKEIEIAAPRRQTLDLPPIEGVSRIVIIAPQLNHLTASLHNYFCYNYIVPMIPGLQLLKSLQLYAPRSEKKLKISSPKLEKFELCSMPGLEEF EVDGGPDLSNFILRFHGSNAYSLKKCEIRNAAACCLWEVDCRMQCYKSSDACRCYSELKSFLAKFSHQFHTVNFSCHCTPVLNTRGRRYQFFYHDIWGAK VDKSLMRIVTAGNAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039716 [exp]	0	1
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Lus10007068 [exp]	1.0	0.9225
AT1G09930		ATOPT2	oligopeptide transporter 2 (.1...		Lus10010750 [exp]	13.3	0.8114
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003124 [exp]	17.6	0.7979
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10005081 [exp]	21.2	0.7808
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014403 [exp]	22.1	0.7191
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10028814 [exp]	26.2	0.7681
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10004965 [exp]	28.6	0.7618
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Lus10008374 [exp]	30.6	0.7676
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10004637 [exp]	33.3	0.7616
AT3G52610			unknown protein		Lus10022698 [exp]	38.7	0.7602

Compare expression of checked genes

Lus10039716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.