Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06920 155 / 5e-44 FLA21 FASCICLIN-like arabinogalactan protein 21 precursor (.1) AT1G30800 52 / 3e-07 Fasciclin-like arabinogalactan family protein (.1) AT4G12950 44 / 6e-05 Fasciclin-like arabinogalactan family protein (.1) AT4G29980 42 / 0.0002 unknown protein AT5G40940 42 / 0.0004 FLA20 putative fasciclin-like arabinogalactan protein 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018505 [exp] 543 / 0 AT5G06920 200 / 6e-61 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10020296 [exp] 411 / 1e-142 AT5G06920 192 / 2e-57 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10023390 [exp] 50 / 1e-06 AT1G30800 116 / 2e-31 Fasciclin-like arabinogalactan family protein (.1) Lus10019675 [exp] 48 / 1e-05 AT5G06920 71 / 4e-13 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10038414 [exp] 45 / 6e-05 AT1G30800 117 / 5e-32 Fasciclin-like arabinogalactan family protein (.1) Lus10016437 [exp] 44 / 0.0001 AT5G06920 68 / 3e-12 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Lus10031214 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152200 [exp] 231 / 5e-73 AT5G06920 296 / 1e-98 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Potri.008G128200 [exp] 47 / 2e-05 AT5G40940 174 / 7e-51 putative fasciclin-like arabinogalactan protein 20 (.1) Potri.005G079500 [exp] 45 / 7e-05 AT5G06920 63 / 1e-10 FASCICLIN-like arabinogalactan protein 21 precursor (.1) Potri.008G127500 [exp] 42 / 0.0004 AT5G40940 106 / 7e-26 putative fasciclin-like arabinogalactan protein 20 (.1) Potri.017G111600 [exp] 42 / 0.0007 AT5G40940 216 / 2e-66 putative fasciclin-like arabinogalactan protein 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10039717 pacid=23165115 polypeptide=Lus10039717 locus=Lus10039717.g ID=Lus10039717.BGIv1.0 annot-version=v1.0 ATGGAGTCATTCTTCCAGAGATGGAAAGCGACTATCTACTTCTCAATATCTACAGTCCTAGCCTTCACCGCCTTCTCCATAGGACTCCACTCGACCGTCA CTCCACTCCACCACCCGTCACCTCCTTCCTTTGTTCCTTCCCTCCCACCGCTGGCGGCGAATATCCGCAGCCTCTCCACCAACGCCACGCTCTATCTCCA AAAATCTGGATTCTCAGTCGCAGAATCCCTCCTACTGGCATACCCTGAGACATTCTTCTCCACCGCACACTCCACCATCTTCGCTGTCAAAGACTCCATC TTGTCCCCCGCCGACGCCGCATCTCCGTCCTCTGGCGCCTCCGGCGCTCCCCGGTTGCTTCTGAAGCAGCTCCTTCTGTACCATACGTCTCCTCTCAGCC TCCCCATGTCGGAGATTCTCAAACTCCCTCCTGGTACGTGCCTCCCGACTCTTGTCGACGGCAAGACCCTAGTCGTCACCAAGATCGACGTCGAGAACCG AGCCGCAGAGATCAACGGCGTCAAGATTTCCCATCCGGACGTCATCATTGAAGGTTCGGTTGTCATCCACGGCGTCCGCGAGCAATTCTCGTCCATGGAA ACCGGCGACGGCAGCGGTCTTATCTCTCCAACCACTTGCGACGCCGCCGCTGGGAGGAACTCGAGCTTACTCACGGACTCCGTCGACTTCAGGAATATCG TCCACTGGTCCAAGATCGTGCGATCACTCAGCTTAAAGGGGTTCGTCTCATTCGCCGTCGGATTGAACTCTGTACTCGACGGGATTCGCAAAGACTACAA GGACTTGAAATCGGTGACCGTATTCAGTCCACCGGATTTCTCCGTCGGTTCTTCTTCCGCTCCGATGATGGACAGAGTCGTCAGAATTCACATCGTGCCA CGGAGGATTTCCTACGAAGAGCTCATGAACTTAACCAACACGACGTCGTCTCTGAAGACTCTGCTGTCTGGTCATAATCTGGAGGTGAAACTTGAGCCAG CGAAGAATAATGCTACAGCACGATTGACCGTCAATGCAGTCGAGATTCTCAGGCCTGAGATTTTCAAGTCTGATAAGTTCGTTGTCCATGCGATCTCGAA ACCTCTCTGGATCGGTAAGGTTTCGAAGAAGAAATCTAGTAGTTAG
AA sequence Show only first row Show all	>Lus10039717 pacid=23165115 polypeptide=Lus10039717 locus=Lus10039717.g ID=Lus10039717.BGIv1.0 annot-version=v1.0 MESFFQRWKATIYFSISTVLAFTAFSIGLHSTVTPLHHPSPPSFVPSLPPLAANIRSLSTNATLYLQKSGFSVAESLLLAYPETFFSTAHSTIFAVKDSI LSPADAASPSSGASGAPRLLLKQLLLYHTSPLSLPMSEILKLPPGTCLPTLVDGKTLVVTKIDVENRAAEINGVKISHPDVIIEGSVVIHGVREQFSSME TGDGSGLISPTTCDAAAGRNSSLLTDSVDFRNIVHWSKIVRSLSLKGFVSFAVGLNSVLDGIRKDYKDLKSVTVFSPPDFSVGSSSAPMMDRVVRIHIVP RRISYEELMNLTNTTSSLKTLLSGHNLEVKLEPAKNNATARLTVNAVEILRPEIFKSDKFVVHAISKPLWIGKVSKKKSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10039717 [exp]	0	1
AT1G76860			Small nuclear ribonucleoprotei...		Lus10011293 [exp]	19.0	0.7440
AT5G49170			unknown protein		Lus10022872 [exp]	20.1	0.7457
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	21.9	0.7402
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10004822 [exp]	22.2	0.6864
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	26.5	0.7398
					Lus10030329 [exp]	29.7	0.6895
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10042047 [exp]	30.1	0.7328
AT5G16060			Cytochrome c oxidase biogenesi...		Lus10033547 [exp]	33.1	0.7105
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10012860 [exp]	38.1	0.6515
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	39.6	0.7046

Compare expression of checked genes

Lus10039717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.