Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16030 251 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G26730 174 / 1e-54 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G24480 113 / 2e-30 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G24805 108 / 9e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G01710 79 / 7e-17 methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018506 [exp] 419 / 1e-150 AT2G16030 269 / 9e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006247 [exp] 117 / 5e-32 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036941 [exp] 115 / 3e-31 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013662 [exp] 114 / 1e-30 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014232 [exp] 84 / 2e-18 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10022081 [exp] 82 / 7e-18 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10001267 [exp] 76 / 9e-16 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10012217 [exp] 76 / 1e-15 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10022682 [exp] 59 / 1e-09 AT5G01710 698 / 0.0 methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152100 [exp] 288 / 5e-99 AT2G16030 225 / 1e-74 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G125300 [exp] 261 / 2e-88 AT2G16030 197 / 2e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G052100 [exp] 110 / 4e-29 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G088400 [exp] 107 / 3e-28 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G105100 [exp] 66 / 2e-12 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.016G128100 [exp] 66 / 2e-12 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.013G153300 [exp] 52 / 1e-07 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.006G128800 [exp] 44 / 5e-05 AT3G53400 418 / 3e-143 unknown protein Potri.016G088900 [exp] 41 / 0.0004 AT3G53400 420 / 6e-144 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10039718 pacid=23165278 polypeptide=Lus10039718 locus=Lus10039718.g ID=Lus10039718.BGIv1.0 annot-version=v1.0 ATGGAGAAACGCATAGAGAGTTTGCTCAACAGGGTCTCAATCGCTAGCATTGCAATCGCGACCCTAACCCTCCTTATCACCTACCTCCAAATCCCCGAAA CCTGCATGCCGCCGGAAACCCCAATCACAAAGCCTCACCAGAGATTCCCTTCCTCCACCTGCGACTCCTCCCTCCACCGTCCGTACCTCTCCCGGGAGAA GAAGAATCTCCGCCTATGGTCCTCCAAAGCCTGGACCTCTCAGCTCACTTCCTTCACCAAATTCTTCTCCGATCTCCAATCCTCGGAGCTTATACACAAC CACTCCCGATTCCTCTGCCTCGCCGCCGGCGCCGGCCACGAGGTAATGGCGCTGCAACAAATCGGAGTGGAGGACGTGATCGGAGTCGAGCTCGTCGAGT CCCTGCCGCTGGTGAGAAAGGCAGATCCGATGAACTTGCCGTTCTTCGACGACGTTTTCGACATTGCCTTCACTGCTCGTTTGGCGGAGGCGTTGTTTCC GCGGAGATTCGTTTCCGAGATGGAGAGGACAGTGGTTAGCCGTGGGTACTGCGTTGTCGCCGTGGAAGAGTGTGGGAAGGAGACTGTGGATGATGTTGTT GGACTGTTTCAGAGGTCCAAATTCGTCGATGTGAAGAATGTTACACTGATTGGAAAGAAGATGACCAGAATTCTCTTGAGAGTCATCAACGATTCTTCTA CTTCGTGA
AA sequence Show only first row Show all	>Lus10039718 pacid=23165278 polypeptide=Lus10039718 locus=Lus10039718.g ID=Lus10039718.BGIv1.0 annot-version=v1.0 MEKRIESLLNRVSIASIAIATLTLLITYLQIPETCMPPETPITKPHQRFPSSTCDSSLHRPYLSREKKNLRLWSSKAWTSQLTSFTKFFSDLQSSELIHN HSRFLCLAAGAGHEVMALQQIGVEDVIGVELVESLPLVRKADPMNLPFFDDVFDIAFTARLAEALFPRRFVSEMERTVVSRGYCVVAVEECGKETVDDVV GLFQRSKFVDVKNVTLIGKKMTRILLRVINDSSTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16030			S-adenosyl-L-methionine-depend...		Lus10039718 [exp]	0	1
					Lus10025229 [exp]	2.2	0.8324
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	15.8	0.8055
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	17.9	0.8095
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Lus10019496 [exp]	21.2	0.7973
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031823 [exp]	28.4	0.8011
AT5G56110	MYB	MS188, ATMYB80,...	MALE STERILE 188, ARABIDOPSIS ...		Lus10008353 [exp]	38.9	0.7710
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10034932 [exp]	47.1	0.7951
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10013708 [exp]	52.3	0.7904
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10024838 [exp]	54.2	0.7907
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10037398 [exp]	65.7	0.7701

Compare expression of checked genes

Lus10039718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.