Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03495 89 / 2e-20 HXXXD-type acyl-transferase family protein (.1) AT1G03940 80 / 2e-17 HXXXD-type acyl-transferase family protein (.1) AT3G29670 63 / 1e-11 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT5G39090 57 / 1e-09 HXXXD-type acyl-transferase family protein (.1) AT3G29590 57 / 2e-09 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G39050 51 / 3e-07 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29635 48 / 2e-06 HXXXD-type acyl-transferase family protein (.1) AT5G61160 47 / 4e-06 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 47 / 5e-06 HXXXD-type acyl-transferase family protein (.1) AT5G39080 40 / 0.0006 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018507 [exp] 364 / 2e-124 AT1G03495 286 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Lus10033754 [exp] 212 / 2e-66 AT1G03495 299 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Lus10031587 [exp] 202 / 2e-62 AT1G03495 305 / 7e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020714 [exp] 174 / 7e-52 AT1G03495 337 / 1e-111 HXXXD-type acyl-transferase family protein (.1) Lus10029826 [exp] 104 / 2e-27 AT1G03495 91 / 6e-21 HXXXD-type acyl-transferase family protein (.1) Lus10039746 [exp] 85 / 6e-19 AT1G03940 304 / 8e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039745 [exp] 76 / 7e-16 AT1G03940 297 / 1e-95 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 54 / 2e-08 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 54 / 2e-08 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118101 [exp] 127 / 2e-34 AT1G03940 339 / 2e-112 HXXXD-type acyl-transferase family protein (.1) Potri.019G118000 [exp] 127 / 3e-34 AT1G03940 328 / 6e-108 HXXXD-type acyl-transferase family protein (.1) Potri.009G063500 [exp] 76 / 9e-16 AT1G03940 280 / 4e-89 HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 63 / 2e-11 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 61 / 1e-10 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 60 / 2e-10 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 60 / 2e-10 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 59 / 4e-10 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.017G094700 [exp] 59 / 4e-10 AT5G39080 315 / 8e-103 HXXXD-type acyl-transferase family protein (.1) Potri.009G019700 [exp] 59 / 6e-10 AT3G29590 304 / 1e-98 HXXXD-type acyl-transferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039721 pacid=23165355 polypeptide=Lus10039721 locus=Lus10039721.g ID=Lus10039721.BGIv1.0 annot-version=v1.0 ATGTGGGCTTTTCTTTGCAAGAACACATCATCGGAGGATTTGGCTGAGGCTCTTCCGTTGCCGTCTCACGAGAGGGAAAGGGAAATCATCCGGCGAGCTT ATCCGGGTCTCGAAGCGGCCCTCGCCAGCCAGTGGTTCGGACTCGGGTCGGGTTGGGACTTTGATTCCGGTCGAGCTGATATCTTAACCGGAAGCGATAA GGTTCGGTTGACTCTCGTGATAACCCGGCCGATGATCGAACGGATAAAACTGTGGATCCGGGGAACCAATCCAACACTATTTCATTTATCTGCTTTCGTG GTGACGTCATCTCTGGTCTGGACTCTACTCATCAAATCCGTAGCGATCGGAGAGGAATTCGACGGTCCGGAAACGCTCTACCACCTCAATTTCGTCGCCG ACTGCCGGCGCTGGTTAGGACTGGACGGATTATCACCATCCTACTTCGGGAACTGCCTAGCACATTATTACGTGTCGATGAAAAGAGGAGAGGCGGCGAC GGAGGAAGCGATTCGGGAGAAGGTGGGAGAGATGACCGACGGCGGCGGCGGAGGGGTGTTGTTGACGGGGGCGGAGAGGTGGGTGCCGAAGTGGAATGAG CTGGGGGAAGGAGGGAGGATGGTTACGATAGCTGGGTCGCCGAAATTGAGAGCTTACGAGACGGATTTCGGGTGA
AA sequence Show only first row Show all	>Lus10039721 pacid=23165355 polypeptide=Lus10039721 locus=Lus10039721.g ID=Lus10039721.BGIv1.0 annot-version=v1.0 MWAFLCKNTSSEDLAEALPLPSHEREREIIRRAYPGLEAALASQWFGLGSGWDFDSGRADILTGSDKVRLTLVITRPMIERIKLWIRGTNPTLFHLSAFV VTSSLVWTLLIKSVAIGEEFDGPETLYHLNFVADCRRWLGLDGLSPSYFGNCLAHYYVSMKRGEAATEEAIREKVGEMTDGGGGGVLLTGAERWVPKWNE LGEGGRMVTIAGSPKLRAYETDFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039721 [exp]	0	1
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10000185 [exp]	3.5	0.8286
					Lus10038619 [exp]	4.2	0.8215
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022313 [exp]	4.5	0.7907
					Lus10000169 [exp]	5.5	0.8180
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	9.3	0.8270
AT1G72100			late embryogenesis abundant do...		Lus10041310 [exp]	10.6	0.7273
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10043289 [exp]	11.2	0.7958
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001244 [exp]	11.6	0.6358
AT5G19875			unknown protein		Lus10006311 [exp]	16.1	0.8189
					Lus10007080 [exp]	18.0	0.7169

Compare expression of checked genes

Lus10039721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.