Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54510 828 / 0 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT4G27260 821 / 0 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT4G37390 723 / 0 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT2G14960 714 / 0 GH3.1 Auxin-responsive GH3 family protein (.1) AT2G23170 712 / 0 GH3.3 Auxin-responsive GH3 family protein (.1) AT1G59500 680 / 0 GH3.4 Auxin-responsive GH3 family protein (.1) AT1G28130 649 / 0 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT2G47750 600 / 0 GH3.9 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) AT1G23160 542 / 0 Auxin-responsive GH3 family protein (.1) AT5G13320 532 / 0 WIN3, GDG1, PBS3, GH3.12 HOPW1-1-INTERACTING 3, AVRPPHB SUSCEPTIBLE 3, GRETCHEN HAGEN 3.12, GH3-LIKE DEFENSE GENE 1, Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018510 [exp] 1144 / 0 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 800 / 0 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 799 / 0 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 683 / 0 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 682 / 0 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 682 / 0 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10014869 [exp] 640 / 0 AT4G37390 858 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10003039 [exp] 377 / 2e-123 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10005151 [exp] 376 / 4e-123 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G151100 [exp] 837 / 0 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 833 / 0 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 823 / 0 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 725 / 0 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 721 / 0 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.007G050300 [exp] 692 / 0 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.002G206400 [exp] 637 / 0 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) Potri.001G069000 [exp] 616 / 0 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.003G161300 [exp] 610 / 0 AT1G28130 910 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.019G103500 [exp] 385 / 2e-126 AT4G03400 897 / 0.0 DWARF IN LIGHT 2, Auxin-responsive GH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF03321 [flax] [poplar] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Lus10039723 pacid=23165044 polypeptide=Lus10039723 locus=Lus10039723.g ID=Lus10039723.BGIv1.0 annot-version=v1.0 ATGGCTGAAGGTAATTCGTCAACTAATGAACGCAACCCTTCTGATCATAAGAACAAAAGAGCCCTAGAGTTCATCGAGCAAGTCACTAACAATGCCGATG AAGTCCAGACTCGAGTCCTCGCCGAAATCCTCGCCAGAAACTCCGGCGTTGAGTACTTGCAAAGGCATGGAAGCATCATCGACAAGGCCACTTTCAAGAA GCTGATTCCTCTAGTCACGTACGAGGATATCAAGCCGGATATCGACCGAATCGCCAATGGTGACACTTCTCCCATCCTCTGCTCCAGACCCATCTCCGAA TTCTTGACCAGTTCAGGGACGTCGGCGGGGGAGAGGAAGCTGATGCCGACGATCAACGAAGAGATGGAGAGGAAATCACAGCTCTACAGCTTACTAATGC CGGTTATGAACCAATTCCTCCCTGGTTTATCCACCGCCGGCAAAGGAATGTACTTCCTCTTCGTCAAATCAGAATCCATAACTCCAGCCGGTTTACCTGC TCGCCCGGTTCTAACCAGCTACTACAAGAGCCAGCATTTCGCCAACTCGATTCGGTCTTCGGAAGATTCCTACACCAACTACACGAGCCCGACGGAATCG ATCCTCTGCCCGGACTCTCACCAGAGCATGTACTCCCAGCTGCTCTGCGGCCTGGCTCGAAACATGGAAGTGGTCCGAGTCGGGTCGGTTTTTGCATCCG GGTTTATCCGGGCGATCAAGTTTTTCGAAAAGAATTGGCAGGTTTTGTGCAATGACATCAGGAGTGGGACCGTTGACTCCGGGGTTATTATTGACCCTGG AGTCAGATCGGCCGTGTCTAGGGTTCTGGTGGGGCCGAACCCTGAACTTGCCGATTTCGTGGAAGGGGAATGTAGGAGGGAAGTGTCTTGGAGAGGGATT ATTGCTAGGGTTTGGCCTAATGCTAAGTACATTGATGTGATTGTGACTGGAGCAATGTCACAATACATCCCTACACTTGAGCATTATGGGGATGGTTTGC CACTTGTTTGCTCCATGTATGCTTCCTCTGAGTGTTACTTTGGGCTTAACTTGAATCCTTTGTGTAAGCCTAGTGAAGTATCCTACACACTTGTTCCGAC CATGGCTTATTTTGAGTTCTTACCCGTTGACCGAACCGTTGGATTTAGTACCAGTTCGTTAATGATGAATGGCAATGATAGCACACAAGACCGGTTGGTT GATCTGGTCAATGTTCAGCTTGGTAAAGAGTACGAACTCGTTGTCACGACTTATGCAGGTTTGTATCGGTATAGAGTGGGAGACATTCTCAGAGTCGCGG GGTTCAAGAACAAGGCGCCACAATTCACATTCGTATGCAGGAAGAACGTCGTTCTAAGCATCGATTCTGACAAGACCAACGAAGTGGAGCTGCAAGAAGC GGTGACGAAAGCTGCAACCAAACACCTCTCGCCACTAAACGCATCTCTCGTCGAATACACAAGCTACGCGGAGACATCGTCGATTCCTGGACATTACGTC ATGTACTGGGAGATTGACAACAACGACGAGTCGACGAAGCACAAAGCTCCTCGGGATTCAGTTCTCGAGGAATGTTGCCTCGAGGTCGAGGAATCCCTGA ACAGCGTTTACAGGCAGGGCCGAGTTTCGGACAACTCCATCGGTCCGCTGGAAATAAGGGTGGTTGAGAATGGAACGTTTGACAAAGTCATGGACTATGC CATCAGCCAATTAGGTGCTTCCATTAATCAGTACAAGACTCCAAGGTGTGTGAAGCAGCATGGACCATTGGTTGAGCTGCTGAACTCTAGGGTTGTGTCA AGTTGCTTCAGTCCCAAGTTACCCAAATGGGCCCCTGGTCTCAAACAATGGTCCACTGATTAA
AA sequence Show only first row Show all	>Lus10039723 pacid=23165044 polypeptide=Lus10039723 locus=Lus10039723.g ID=Lus10039723.BGIv1.0 annot-version=v1.0 MAEGNSSTNERNPSDHKNKRALEFIEQVTNNADEVQTRVLAEILARNSGVEYLQRHGSIIDKATFKKLIPLVTYEDIKPDIDRIANGDTSPILCSRPISE FLTSSGTSAGERKLMPTINEEMERKSQLYSLLMPVMNQFLPGLSTAGKGMYFLFVKSESITPAGLPARPVLTSYYKSQHFANSIRSSEDSYTNYTSPTES ILCPDSHQSMYSQLLCGLARNMEVVRVGSVFASGFIRAIKFFEKNWQVLCNDIRSGTVDSGVIIDPGVRSAVSRVLVGPNPELADFVEGECRREVSWRGI IARVWPNAKYIDVIVTGAMSQYIPTLEHYGDGLPLVCSMYASSECYFGLNLNPLCKPSEVSYTLVPTMAYFEFLPVDRTVGFSTSSLMMNGNDSTQDRLV DLVNVQLGKEYELVVTTYAGLYRYRVGDILRVAGFKNKAPQFTFVCRKNVVLSIDSDKTNEVELQEAVTKAATKHLSPLNASLVEYTSYAETSSIPGHYV MYWEIDNNDESTKHKAPRDSVLEECCLEVEESLNSVYRQGRVSDNSIGPLEIRVVENGTFDKVMDYAISQLGASINQYKTPRCVKQHGPLVELLNSRVVS SCFSPKLPKWAPGLKQWSTD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10039723 [exp]	0	1
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020305 [exp]	1.4	0.9063
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	16.8	0.8810
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10039006 [exp]	22.8	0.8315
AT5G61540			N-terminal nucleophile aminohy...		Lus10020385 [exp]	27.2	0.8117
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10029137 [exp]	27.8	0.8610
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013936 [exp]	33.1	0.8095
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Lus10007322 [exp]	36.4	0.7786
					Lus10001241 [exp]	39.5	0.8458
					Lus10003137 [exp]	42.1	0.8264
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10009182 [exp]	43.4	0.8374

Compare expression of checked genes

Lus10039723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.