Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27280 138 / 2e-43 Calcium-binding EF-hand family protein (.1) AT5G54490 135 / 2e-42 PBP1 pinoid-binding protein 1 (.1) AT2G46600 127 / 7e-39 Calcium-binding EF-hand family protein (.1) AT3G50360 53 / 1e-09 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT2G27030 50 / 8e-09 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT5G21274 49 / 3e-08 ACAM-6, CAM6 calmodulin 6 (.1) AT3G56800 49 / 3e-08 ACAM-3, CAM3 calmodulin 3 (.1) AT2G41110 49 / 3e-08 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT3G43810 48 / 6e-08 CAM7 calmodulin 7 (.1) AT3G22930 48 / 7e-08 CML11 calmodulin-like 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018511 [exp] 225 / 5e-78 AT4G27280 140 / 2e-44 Calcium-binding EF-hand family protein (.1) Lus10033753 [exp] 184 / 7e-62 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10031588 [exp] 184 / 7e-62 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10036734 [exp] 147 / 2e-47 AT5G54490 107 / 2e-31 pinoid-binding protein 1 (.1) Lus10030227 [exp] 126 / 1e-38 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10005985 [exp] 126 / 1e-38 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10001775 [exp] 49 / 6e-08 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10022589 [exp] 49 / 6e-08 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10027283 [exp] 48 / 7e-08 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G151000 [exp] 174 / 5e-58 AT5G54490 147 / 7e-47 pinoid-binding protein 1 (.1) Potri.019G120600 [exp] 161 / 9e-53 AT5G54490 147 / 6e-47 pinoid-binding protein 1 (.1) Potri.011G129100 [exp] 147 / 4e-47 AT4G27280 124 / 5e-38 Calcium-binding EF-hand family protein (.1) Potri.001G412077 [exp] 145 / 1e-46 AT4G27280 117 / 4e-35 Calcium-binding EF-hand family protein (.1) Potri.011G039500 [exp] 139 / 4e-44 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.011G039600 [exp] 139 / 4e-44 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.004G027200 [exp] 136 / 9e-43 AT5G54490 127 / 3e-39 pinoid-binding protein 1 (.1) Potri.014G101700 [exp] 127 / 4e-39 AT2G46600 181 / 3e-60 Calcium-binding EF-hand family protein (.1) Potri.002G174900 [exp] 127 / 1e-38 AT2G46600 174 / 4e-57 Calcium-binding EF-hand family protein (.1) Potri.011G125300 [exp] 123 / 1e-37 AT5G54490 122 / 5e-37 pinoid-binding protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039724 pacid=23165217 polypeptide=Lus10039724 locus=Lus10039724.g ID=Lus10039724.BGIv1.0 annot-version=v1.0 ATGGCGTCGAAAACAGGGGACTTCGAGGACCTGCTACCAGTGATGGCCGACAAGCTGGGAGGGGAGGGTCTGATCAAGGAGCTTTGCAACGGGTTCCAGT TGCTGATGGAGAAGGACAGAAAGGTCATTACACCCGCCAGCTTGAAGAGGAACGCCGCCGTTTTGGGCCTGCAGGACTTGTCCGACGCGGAGCTCGACGG GATGGTTAAAGAAGGGGACCTTGACGGTGACGGCGTTTTGAACCAGATGGAGTTCTGCGTTTTGATGTTTAGATTGAGCCCTGAGTTGATGAGGGAGTCC AGGAACTGGCTTGAAGAAGCTATTGAAGATGAATTCAGATTTTGA
AA sequence Show only first row Show all	>Lus10039724 pacid=23165217 polypeptide=Lus10039724 locus=Lus10039724.g ID=Lus10039724.BGIv1.0 annot-version=v1.0 MASKTGDFEDLLPVMADKLGGEGLIKELCNGFQLLMEKDRKVITPASLKRNAAVLGLQDLSDAELDGMVKEGDLDGDGVLNQMEFCVLMFRLSPELMRES RNWLEEAIEDEFRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27280			Calcium-binding EF-hand family...		Lus10039724 [exp]	0	1
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	1.0	0.9085
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	1.7	0.8874
AT4G27280			Calcium-binding EF-hand family...		Lus10018511 [exp]	2.0	0.8983
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	2.8	0.8782
AT5G10530			Concanavalin A-like lectin pro...		Lus10033778 [exp]	3.5	0.8501
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	6.3	0.8523
AT5G57910			unknown protein		Lus10036255 [exp]	8.9	0.8343
AT5G27530			Pectin lyase-like superfamily ...		Lus10036205 [exp]	9.2	0.8418
AT4G36550			ARM repeat superfamily protein...		Lus10028307 [exp]	10.2	0.8128
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031723 [exp]	11.4	0.8224

Compare expression of checked genes

Lus10039724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.