Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 443 / 3e-143 S-locus lectin protein kinase family protein (.1) AT4G23180 387 / 2e-125 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G21390 388 / 8e-124 B120 S-locus lectin protein kinase family protein (.1) AT4G27300 385 / 2e-123 S-locus lectin protein kinase family protein (.1) AT1G11330 385 / 4e-123 S-locus lectin protein kinase family protein (.1.2) AT4G05200 377 / 7e-122 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23150 374 / 7e-121 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23230 368 / 2e-120 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT1G11340 378 / 9e-120 S-locus lectin protein kinase family protein (.1) AT4G23140 371 / 2e-119 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018512 [exp] 646 / 0 AT4G03230 823 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 530 / 0 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10031591 [exp] 525 / 6e-175 AT4G03230 853 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020083 [exp] 386 / 1e-128 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 397 / 2e-127 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 397 / 2e-126 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006742 [exp] 399 / 2e-125 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 390 / 5e-125 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007611 [exp] 390 / 6e-125 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G120000 [exp] 498 / 2e-164 AT4G03230 967 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119700 [exp] 483 / 2e-158 AT4G03230 1025 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119900 [exp] 483 / 3e-158 AT4G03230 974 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119600 [exp] 473 / 2e-154 AT4G03230 983 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150800 [exp] 469 / 2e-153 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 405 / 4e-131 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 406 / 1e-130 AT4G21380 711 / 0.0 receptor kinase 3 (.1) Potri.011G125351 [exp] 403 / 3e-130 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G024632 [exp] 389 / 3e-130 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G037300 [exp] 404 / 7e-130 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10039725 pacid=23165277 polypeptide=Lus10039725 locus=Lus10039725.g ID=Lus10039725.BGIv1.0 annot-version=v1.0 ATGATATTCCGTTATCCTGCATCCACCTTCTCCTGCGTTCTCATCTTCTCAATCTTGATCACAATCAGTAGTAGCTCCGCGCAAGACGATGAATACTTGG ATTGCAGCAGGCAGATCGAATGTGGAGACTTACGTTTCGGTTTTCCCTTTCGGGGACCCGGCCGTCCTAGTTATTGCGGCCTCCCAGAGTTCAATCTCAC TTGCCGAAACCGTATTCCCACCATCTCTATCTCCGGTCTCTCTTATCGGATACTCGAAATTAACAACTCCTCCCAAATCCTAACGCTTTTGCAGACCGAT TTCGACCAAAATCTCTGTCCTTCGAATCCCCGCAACGTCACCGGGGTCGAGAATCTGTTCAACTTCACGGTCGAGACCCAATTTGTGGATCTTTACTACG GTTGCTCGCTGCCAACATCCGGAATTCTAATCCCCCTGGATTTGGGGAGCTTCAGTTGCCCCAACAACCGGTCACAAGGGGGAGACTTTCTGCCGACGGA GAGCGTACTCGGACGATATGAAGCCGCAATCAGGGGCTGGTTGGCACAATGCAGCAAAAAAGTAAGGGTCCCGGTAAAGCTAACGGCTATGGAGTCGCTC CAGAGGGACCCGACGGGTGCGAGGTTAACAGAGACGATTGATGGAGGTTTTGGGATGCAGTGGACATCGAACGACAGTTTGTGCTCCACCTGTAGATTCT CAGGTGGGCAGTGCGGTTTTAATGATACGACGAGCTCGTTCGCTTGCTTTTGTGATGATCAACCGTATGGAACGGGATGCGATTCTAGTGCAATTGCCCC GACAGCTGCTCAACCCAATGTTTCAAATAGAAGAAGACTGTACTCCATTATCTTTCCAATTCTTGGAGGTGTTCTGATCATTCTGATCATTAGCTTAGCC ATACGGCGATGGATGAAAAGAAAAGTAAGAAAAGATGCGAAGAAGAAGAACCGGGTGAAAGAGTTCTTGATCAACACGACCGAATTCGGAGAAGACGATA AGAAAGACATAGATGTGCCATTCTTCGACCTGGAATGCATTCTATCTGCTACAGACTTCTTCTGCCACAACAACAAGCTTGGCCAGGGAGGTTTCGGCCC TGTTTACAAGGGGATGTTTCCAGGGGGGCAAGAGATAGCTGTGAAGAGGCTTTCAAGTGGTTCGACACAAGGGCTAGAAGAGTTCAAGAACGAAGTCGTT TTGATCGCGAAGCTGCAGCATAGGAACCTGGTGAGGTTGTTGGGATTCTGCGTTGAAGGGAGTGAAAAGATGTTGTTGTATGAGTACATGCCTAACAAGA GCTTGGATTCCTTCATCTTCAATCGGAGTCGAAGTGTGTTGCTGAATTGGGAGGTGAGGTTCAACATCATAATGGGGATTGCTCGAGGGATGCTTTACCT CCACCGTGATTCGAGGCTGACAATTGTCCACCGGGACTTGAAGACGAGTAATGTACTTCTCGACGAGGAGATGAACCCCAAGATATCGGATTTTGGCATG GCTAGGATAGTGGCAGCCAAGCAAACTGAGGTCGACACTGTTCGAGTTGTTGGAACTTACGGATACATGTCTCCAGAATATGCTTTAGATGGGAAATTCT CTACGAAATCCGACGTGTTCAGCTTCGGAATAGTTGTTCTTGAGATCCTCATTGGGAGGAAGAACACTGGCTTTTACAAGTATGAAGAAGGCATTTCCCT TTCAAGCCATGTGTGGGGGAAGTGGAGGGAGGGCAATGTAATGGAAGTGATGGAGCAATCATTGCCCGGTACATGCAACGCCAACGAGTTCATGAGGTGT GTGATCGTGGCGTTGTTGTGCGTGCAGGAGGATCCTAGCGACCGGCCCACCATGGCTGATGTCGTATTCATGCTTGGATGCGATCCATCGAGCCTTCCTC ATCCAAAAGAGCCTGCATTTTCGGTTAGGAACCATGCAGCCACCGCTCCTTCTACCAGCGTTGGGACTATGGAGATCACAACCGAATTACAAGGAAGATA G
AA sequence Show only first row Show all	>Lus10039725 pacid=23165277 polypeptide=Lus10039725 locus=Lus10039725.g ID=Lus10039725.BGIv1.0 annot-version=v1.0 MIFRYPASTFSCVLIFSILITISSSSAQDDEYLDCSRQIECGDLRFGFPFRGPGRPSYCGLPEFNLTCRNRIPTISISGLSYRILEINNSSQILTLLQTD FDQNLCPSNPRNVTGVENLFNFTVETQFVDLYYGCSLPTSGILIPLDLGSFSCPNNRSQGGDFLPTESVLGRYEAAIRGWLAQCSKKVRVPVKLTAMESL QRDPTGARLTETIDGGFGMQWTSNDSLCSTCRFSGGQCGFNDTTSSFACFCDDQPYGTGCDSSAIAPTAAQPNVSNRRRLYSIIFPILGGVLIILIISLA IRRWMKRKVRKDAKKKNRVKEFLINTTEFGEDDKKDIDVPFFDLECILSATDFFCHNNKLGQGGFGPVYKGMFPGGQEIAVKRLSSGSTQGLEEFKNEVV LIAKLQHRNLVRLLGFCVEGSEKMLLYEYMPNKSLDSFIFNRSRSVLLNWEVRFNIIMGIARGMLYLHRDSRLTIVHRDLKTSNVLLDEEMNPKISDFGM ARIVAAKQTEVDTVRVVGTYGYMSPEYALDGKFSTKSDVFSFGIVVLEILIGRKNTGFYKYEEGISLSSHVWGKWREGNVMEVMEQSLPGTCNANEFMRC VIVALLCVQEDPSDRPTMADVVFMLGCDPSSLPHPKEPAFSVRNHAATAPSTSVGTMEITTELQGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03230			S-locus lectin protein kinase ...		Lus10039725 [exp]	0	1
AT1G65870			Disease resistance-responsive ...		Lus10030483 [exp]	4.6	0.8068
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10000182 [exp]	15.3	0.7735
AT1G02810			Plant invertase/pectin methyle...		Lus10013416 [exp]	15.5	0.7455
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10015141 [exp]	19.6	0.7656
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008598 [exp]	23.7	0.7372
					Lus10021499 [exp]	25.7	0.7724
AT4G27250			NAD(P)-binding Rossmann-fold s...		Lus10016968 [exp]	30.2	0.7608
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	37.8	0.7855
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038815 [exp]	39.0	0.7717
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012145 [exp]	42.5	0.7714

Compare expression of checked genes

Lus10039725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.