Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38200 96 / 2e-23 Class I glutamine amidotransferase-like superfamily protein (.1) AT1G66860 81 / 2e-18 Class I glutamine amidotransferase-like superfamily protein (.1) AT4G11530 63 / 4e-12 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G21390 63 / 6e-12 B120 S-locus lectin protein kinase family protein (.1) AT4G23180 62 / 8e-12 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G61610 62 / 9e-12 S-locus lectin protein kinase family protein (.1) AT4G11900 61 / 2e-11 S-locus lectin protein kinase family protein (.1) AT4G23240 61 / 3e-11 CRK16 cysteine-rich RLK (RECEPTOR-like protein kinase) 16 (.1) AT1G15040 61 / 4e-11 Class I glutamine amidotransferase-like superfamily protein (.1.2) AT4G23230 61 / 4e-11 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028493 [exp] 161 / 4e-48 AT5G38200 590 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10009152 [exp] 155 / 1e-45 AT5G38200 593 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10016700 [exp] 86 / 4e-20 AT5G38200 621 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10035996 [exp] 86 / 5e-20 AT5G38200 625 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10018512 [exp] 74 / 1e-15 AT4G03230 823 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039725 [exp] 72 / 3e-15 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 69 / 6e-14 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10031591 [exp] 69 / 9e-14 AT4G03230 853 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031592 [exp] 67 / 2e-13 AT4G03230 351 / 3e-107 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G118551 [exp] 103 / 2e-26 AT5G38200 637 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.010G120600 [exp] 86 / 4e-20 AT5G38200 657 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.013G150800 [exp] 72 / 5e-15 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119600 [exp] 66 / 5e-13 AT4G03230 983 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G027600 [exp] 66 / 7e-13 AT4G23280 461 / 3e-156 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) Potri.001G411400 [exp] 66 / 8e-13 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G442200 [exp] 66 / 9e-13 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.019G119700 [exp] 66 / 9e-13 AT4G03230 1025 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119900 [exp] 65 / 1e-12 AT4G03230 974 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G027800 [exp] 65 / 1e-12 AT4G23180 516 / 9e-176 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10039726 pacid=23165313 polypeptide=Lus10039726 locus=Lus10039726.g ID=Lus10039726.BGIv1.0 annot-version=v1.0 ATGGGTTCCTCTGTTTCACACCGGACGGCAACCTCCAAGTCCTCGACGGAACAACAACAACAACAAAAACCAACGATTCTTCTTACTGGTCAACAACAAC AGCCTGTGGTGAGGTTGTTGGGATTCTGCGTTGAAGGGAGTGAAAAGATGTTGCTTTATGAATACATGCCTAACAAGAGCTTGGATTCCTTCATCTTCGC TGGGGAGATACAGCCATCGAAAGAATCAGAGTTGAAACCTGGAGCAGAATTCCTTGAGTCAAATAGAGCGCTGAGTGTGCAGCAAGAGAAGAGGCTGAAG CAGATGACGGTGAGGAACGCAGGTTGTTACATAGAGAAAGTGAAACGTAACGAGGAAAGGGAGAAAGTTGCGAGAAGTGTGGTGGAGAAAATGTCGGTGG AACAGCTGTCCGAGCTTTTGTCTTTCTACCGAAAGATGTCTCATATTTGCTCCGACGTTTTGGAAACAAAGCTTCCTTATCTTGGCGTTGTCTTGAAATG A
AA sequence Show only first row Show all	>Lus10039726 pacid=23165313 polypeptide=Lus10039726 locus=Lus10039726.g ID=Lus10039726.BGIv1.0 annot-version=v1.0 MGSSVSHRTATSKSSTEQQQQQKPTILLTGQQQQPVVRLLGFCVEGSEKMLLYEYMPNKSLDSFIFAGEIQPSKESELKPGAEFLESNRALSVQQEKRLK QMTVRNAGCYIEKVKRNEEREKVARSVVEKMSVEQLSELLSFYRKMSHICSDVLETKLPYLGVVLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38200			Class I glutamine amidotransfe...		Lus10039726 [exp]	0	1
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10035453 [exp]	5.2	0.8752
					Lus10004442 [exp]	8.8	0.8943
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003053 [exp]	14.4	0.8669
					Lus10029608 [exp]	15.7	0.8396
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003902 [exp]	33.6	0.8687
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10032219 [exp]	39.9	0.8721
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039559 [exp]	44.0	0.8702
AT1G80320			2-oxoglutarate (2OG) and Fe(II...		Lus10041279 [exp]	44.2	0.8388
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032416 [exp]	48.6	0.8503
					Lus10026135 [exp]	65.2	0.8545

Compare expression of checked genes

Lus10039726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.