Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54470 107 / 3e-28 CO B-box type zinc finger family protein (.1) AT4G27310 105 / 2e-27 CO B-box type zinc finger family protein (.1) AT3G21890 59 / 4e-11 CO B-box type zinc finger family protein (.1) AT5G24930 55 / 2e-08 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT3G21150 53 / 3e-08 CO EIP6, BBX32 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) AT4G15248 51 / 3e-08 CO B-box type zinc finger family protein (.1) AT2G24790 53 / 4e-08 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT1G68190 52 / 7e-08 CO B-box zinc finger family protein (.1) AT4G15250 50 / 6e-07 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT3G02380 50 / 6e-07 CO ATCOL2, COL2 CONSTANS-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018513 [exp] 277 / 1e-94 AT4G27310 117 / 3e-32 B-box type zinc finger family protein (.1) Lus10031593 [exp] 142 / 5e-42 AT4G27310 119 / 2e-33 B-box type zinc finger family protein (.1) Lus10033751 [exp] 135 / 1e-39 AT4G27310 114 / 9e-32 B-box type zinc finger family protein (.1) Lus10015097 [exp] 67 / 3e-14 AT4G15248 94 / 5e-26 B-box type zinc finger family protein (.1) Lus10031583 [exp] 66 / 8e-14 AT3G21890 96 / 1e-26 B-box type zinc finger family protein (.1) Lus10039694 [exp] 60 / 3e-11 AT4G15248 108 / 1e-31 B-box type zinc finger family protein (.1) Lus10027151 [exp] 59 / 5e-11 AT4G15248 109 / 7e-32 B-box type zinc finger family protein (.1) Lus10035257 [exp] 61 / 9e-11 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10033380 [exp] 58 / 6e-10 AT3G21150 112 / 3e-30 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150500 [exp] 121 / 5e-34 AT4G27310 114 / 1e-31 B-box type zinc finger family protein (.1) Potri.004G026900 [exp] 113 / 2e-31 AT4G27310 109 / 2e-30 B-box type zinc finger family protein (.1) Potri.011G039700 [exp] 112 / 2e-30 AT4G27310 105 / 3e-28 B-box type zinc finger family protein (.1) Potri.001G414700 [exp] 113 / 4e-30 AT5G54470 126 / 2e-35 B-box type zinc finger family protein (.1) Potri.011G125400 [exp] 108 / 3e-28 AT5G54470 120 / 1e-32 B-box type zinc finger family protein (.1) Potri.004G027100 [exp] 100 / 8e-27 AT5G54470 97 / 4e-26 B-box type zinc finger family protein (.1) Potri.004G027000 [exp] 88 / 2e-22 AT4G27310 91 / 5e-24 B-box type zinc finger family protein (.1) Potri.010G251800 [exp] 65 / 2e-12 AT3G21150 130 / 5e-37 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Potri.007G121100 [exp] 60 / 2e-11 AT4G15248 108 / 2e-31 B-box type zinc finger family protein (.1) Potri.017G039400 [exp] 60 / 2e-11 AT4G15248 100 / 3e-28 B-box type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Lus10039727 pacid=23165103 polypeptide=Lus10039727 locus=Lus10039727.g ID=Lus10039727.BGIv1.0 annot-version=v1.0 ATGAAGAGGTGTGAGCTGTGCAAGTCTCTGGCGAGGACGTTCTGCGAGTCGGATCAGGCGAGCCTCTGCTGGTCCTGCGATTCGAAGGTCCACGGGGCTA ATTTCCTGGTGGCGCGTCACTCACGTACTTTGCTCTGTCATTTCTGTCAGTGTCCAACTCCTTGGCAGGCCGCCGGTGCTAAGCTCGGTCATACGGTGTC GTTTTGCTTGCGATGCGCTAATGGTAATACTCATGAAGCTGGGGGAGAGGAGGAGGAGGATGATGAAGAGGTAGAAAGTGGAAGTGAAGGAGAGGAGCTG GAGGAGGAAGAAGAAGAGGATGATGATTTAGGAGATAATCAGGTAGTGCCGTGGTCGTCTTCCGATTCGACGCCTCCGCCGCCGGCGGAGAGTTCGTCTT ACTCGTCGGATAGTGACGGTGGGGAATCCGTCGTTTCGATGAAGCGGGGGAGGGAAAGTTTAGATCTTTGCTGTTTGCTTCAGGACAATATCAGACGTCG ATCTCCGCCGGGGAGTCAATATCGCTCCGTTGAACCGACCCCGGTGAGGCCGATGAAAACCCGGCGTATGGAGCAAGCCGTACTCCGTCCCAGTTCAAGA TCCACGGCCATTGTGTTGAGGCTGGATCCGGTTAGTCAGAGTGGCGTCGGATGCCGCGGAGGAGAGATGGAAGCCGTTGAGGAAGGAGATGGAGATGATT CGCCGGACAATAGTAGCCGTACGATATAG
AA sequence Show only first row Show all	>Lus10039727 pacid=23165103 polypeptide=Lus10039727 locus=Lus10039727.g ID=Lus10039727.BGIv1.0 annot-version=v1.0 MKRCELCKSLARTFCESDQASLCWSCDSKVHGANFLVARHSRTLLCHFCQCPTPWQAAGAKLGHTVSFCLRCANGNTHEAGGEEEEDDEEVESGSEGEEL EEEEEEDDDLGDNQVVPWSSSDSTPPPPAESSSYSSDSDGGESVVSMKRGRESLDLCCLLQDNIRRRSPPGSQYRSVEPTPVRPMKTRRMEQAVLRPSSR STAIVLRLDPVSQSGVGCRGGEMEAVEEGDGDDSPDNSSRTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54470	CO		B-box type zinc finger family ...		Lus10039727 [exp]	0	1
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10025565 [exp]	2.2	0.8684
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10028645 [exp]	4.9	0.8175
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10030214 [exp]	6.0	0.8243
AT5G60460			Preprotein translocase Sec, Se...		Lus10036119 [exp]	15.6	0.7637
AT4G13630			Protein of unknown function, D...		Lus10011854 [exp]	21.6	0.8102
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10018942 [exp]	21.8	0.7515
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030140 [exp]	24.0	0.7372
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023184 [exp]	26.8	0.7860
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10011587 [exp]	29.1	0.7916
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10027883 [exp]	30.3	0.7698

Compare expression of checked genes

Lus10039727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.