Plant FIBer expression Database

Lus10039728 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03240 184 / 1e-59 ATFH, FH frataxin homolog (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033750
[exp]
228 / 1e-76 AT4G03240 197 / 1e-64 frataxin homolog (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G150400
[exp]
210 / 9e-70 AT4G03240 188 / 5e-61 frataxin homolog (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01491 Frataxin_Cyay Frataxin-like domain
Representative CDS sequence
>Lus10039728 pacid=23165230 polypeptide=Lus10039728 locus=Lus10039728.g ID=Lus10039728.BGIv1.0 annot-version=v1.0
ATGGCTTCTTCCAAGCTACTTCCTTTCCGACGATTCAGTAAGTTTCTCCAAACACCCAGCTTCCCTTCTTCACCTTCTCCACGTCCTCGACTCCCGAAAG
CTTCACGATCTATCTCTACTCGCTTCACCTTCGCACCTTCCTCCGCCGTCTCTCCTCCTTCCATAAGCTTCTCGTCTCCAACTTCCACCGTCGACCAGGG
CCCCTCCGCCATCGATTACCGCTCTCTTCTGCAGGAGAACGAGTTCCACAACCTAGCCGATTCAACGATTCATAACCTACAAGAGAAATTGGAGGAATAT
GGGGATACAGCTCACGTGGAAGGATTTGATATTGATTATGGGAATGAGGTTCTGACATTGAAGCTTGGAGAGCTAGGCACCTTTGTGTTGAACAAACAGA
CTCCCAATAGGCAGCTTTGGCTCTCTTCTCCTGGGAGTGGTCCATCGAGGTTCGACTGGGACCATGATGCCGAAGCTTGGATCTATCGGCGGACAAAGGC
TAGCTTGACGAGAGTTTTTGAGAGCGAACTTCAGCAGTTGTGTGGTGAACCGATCAAGCTTACATAA
AA sequence
>Lus10039728 pacid=23165230 polypeptide=Lus10039728 locus=Lus10039728.g ID=Lus10039728.BGIv1.0 annot-version=v1.0
MASSKLLPFRRFSKFLQTPSFPSSPSPRPRLPKASRSISTRFTFAPSSAVSPPSISFSSPTSTVDQGPSAIDYRSLLQENEFHNLADSTIHNLQEKLEEY
GDTAHVEGFDIDYGNEVLTLKLGELGTFVLNKQTPNRQLWLSSPGSGPSRFDWDHDAEAWIYRRTKASLTRVFESELQQLCGEPIKLT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G03240 ATFH, FH frataxin homolog (.1) Lus10039728
[exp]
0 1
AT5G01790 unknown protein Lus10029060
[exp]
5.8 0.8589
AT1G48580 unknown protein Lus10009051
[exp]
15.6 0.7629
AT1G28350 Nucleotidylyl transferase supe... Lus10009938
[exp]
44.2 0.8062
Lus10024524
[exp]
50.4 0.7838
AT5G67390 unknown protein Lus10011531
[exp]
68.0 0.7424
AT4G31750 WIN2 HOPW1-1-interacting 2 (.1) Lus10020104
[exp]
80.0 0.7853
AT2G07050 CAS1 cycloartenol synthase 1 (.1) Lus10025684
[exp]
108.0 0.7839
AT2G25280 unknown protein Lus10001925
[exp]
111.9 0.7729
AT3G13620 Amino acid permease family pro... Lus10039180
[exp]
130.0 0.7664
AT4G33925 SSN2 suppressor of sni1 2, unknown ... Lus10019878
[exp]
143.9 0.7731

Lus10039728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.