Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03260 407 / 1e-133 Outer arm dynein light chain 1 protein (.1.2) AT1G78230 209 / 1e-58 Outer arm dynein light chain 1 protein (.1) AT5G22320 62 / 6e-10 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT2G34680 57 / 3e-08 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) AT5G19680 49 / 8e-06 Leucine-rich repeat (LRR) family protein (.1) AT4G35470 45 / 0.0002 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT4G39400 43 / 0.0009 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018514 [exp] 1206 / 0 AT4G03260 509 / 1e-172 Outer arm dynein light chain 1 protein (.1.2) Lus10020932 [exp] 207 / 2e-58 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1) Lus10033444 [exp] 205 / 7e-58 AT1G78230 450 / 8e-151 Outer arm dynein light chain 1 protein (.1) Lus10038534 [exp] 60 / 6e-09 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10016684 [exp] 51 / 3e-06 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10017178 [exp] 51 / 3e-06 AT2G36570 872 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035976 [exp] 50 / 4e-06 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10032668 [exp] 49 / 4e-06 AT3G15410 261 / 2e-84 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10021131 [exp] 49 / 9e-06 AT2G36570 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119300 [exp] 536 / 0 AT4G03260 549 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.019G119500 [exp] 511 / 5e-174 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2) Potri.013G150300 [exp] 462 / 7e-155 AT4G03260 504 / 2e-170 Outer arm dynein light chain 1 protein (.1.2) Potri.005G164000 [exp] 223 / 8e-64 AT1G78230 464 / 2e-155 Outer arm dynein light chain 1 protein (.1) Potri.002G097800 [exp] 219 / 2e-62 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.011G090200 [exp] 64 / 4e-10 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.001G357700 [exp] 57 / 5e-08 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.006G163900 [exp] 50 / 3e-06 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G086200 [exp] 47 / 2e-05 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.004G199200 [exp] 46 / 6e-05 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10039729 pacid=23165392 polypeptide=Lus10039729 locus=Lus10039729.g ID=Lus10039729.BGIv1.0 annot-version=v1.0 ATGGTTAGGTTCTCGTGCTTCAATGGTCATATTCATTCATCCCACAAATCAAAGACAACTGTTGAACAATCTATGGAGGCAATGCTGAAGGCGTTGCAAG ATTCTACTAAGGTGCAAGATGTGAAGACGTCAACAGCTCAACCTACAAGCTTAAACTCTGTATTTCTCAGGTCAAAAACGGATACTCATATTACTTATGA GGAAGTCTTGGATTCAGAGGAGATTGAGCAAACATCAGGAGTCGAGATTGATCCAGGAATCTGTCATGGAACACTGCTGAAGAGAAGTAAATCCCTAGGG GATGAATTATGCCACGAAGGTAAGATCGATTACAACAAAACAGAAGAAGAGACGGACCAAGGTGGTTCCAGTGACTGCCCTGATCAGAACGGGTCGGGTG GAGCACGAGAAGGCAGCCCGACTAGTGAATATGATAAGGCCCCTCTATCGGAATCTGTTCAAGTCGGTTCTGATATAGTCAACGATGGATCGGTTTTCTC GGCTGGAGATTCTCATCGTTCAAACAAGGAGGTTCCTGGAAGTTGTGGTAACCAGTTATTTGGACTTGGTGCTGATAATTCTGGCGTACCTTCTCCTCCG CGCCCTACCAGGCTCGAAAGATCTCGTTCATTTCCAAACTTCAGGTCTGCCTCTCTGGCATCGGGTGCTCATACTGGATACTTATCAGGAAAGTCAAAAT CTTGTGATGACTTACGTGGGCTGGATATGGGGTGGAAAGATCTTCCTGTTCACGAAGCTGGAATGCAATCCATACATGATAAGGATTGCAGAAGTGAAGG GAATAACTTTGAGAACCTTCCGGACGATGTGTATGATTCTTATGATTACTCTTCTCCTGCTAAAGACTGGGTGATGCCGGTTGCTGACGAGGATGAAAAC TTAGCAGAAGAACAACTCGAACGAGTAGGTGGATCTTCCATGCAGCAACCAGGCGAATATCCGAATGAAGATTTTAGATTCAGGCGAATCAAGGCATGGG TCAACGATCTTCATTCCTGCGGCCCTGTGGACGAAGTAGTTGTATTGCCTGGTATCGACGAACTAGTCAGTACCGAGCCGTCCACTGTTTCGGGCCGACC TACTACTGTTGTAAAAGTGGATGATAAAATGACTCTGGAAACTCCTGTGTTTGAATTTTTTGCAGCTAGAATAACTGCTGGTGTCCTTCCACGTGGACTT CACATGCTGAATCTGGCGAAGAACAATATATCTACGATCGAGGGTTTGCGGGAACTCACTCGACTACGTGTTCTGGACTTGAGCTACAACCGAATATTTA GAATCGGACATGGTCTTGGTTCTTGCTCATCCTTAAAAGAGCTATACTTGGCGGGGAACAAGATAAGCGAGGTCGAAGGTCTGCATCGTCTGCTGAAACT CACAGTCCTCGATCTGCGATTCAACAAGCTCTCGACGACCAAATGTCTCGGCCAGCTTGCAGCCAACTACAGCTCCCTACAAGCCATCAGCCTGGAAGGG AATCCGGCTCAGAAAAACGTCGGAGACGAACAGCTCAAGAAGCACTTGCAGGGACTTCTGCCCCATCTGGTTTACTTCAACAGGCAGGCAACCAAAGCCG GCACTTTAAAGGACGCAGCTGACCGGTCGGTCAGGCTGGGGATAAGTTCAAACAAATCGGTTAGGAAAGCCGGCCATGGGGTAACTGCATCAAGGGCGTT ATCATCATCCACGCACGGTGGTCGTGCGAGTACATCTTCTCCGAAACGGTCGAAGGGGAGGCATGTTAAGCTCCCGCCGAGTGGAACTGGCAGACCGAGC GGCCATGCTCGCCCGCCAGTGCAAGGTTTGGATCTCGGCGGGAGGGTTGTGGATTTCAGAGCCGAGCTGGCTATGACGAGGAGTAAGAGTGAAGGGAATA TGGGACCTCAGTGA
AA sequence Show only first row Show all	>Lus10039729 pacid=23165392 polypeptide=Lus10039729 locus=Lus10039729.g ID=Lus10039729.BGIv1.0 annot-version=v1.0 MVRFSCFNGHIHSSHKSKTTVEQSMEAMLKALQDSTKVQDVKTSTAQPTSLNSVFLRSKTDTHITYEEVLDSEEIEQTSGVEIDPGICHGTLLKRSKSLG DELCHEGKIDYNKTEEETDQGGSSDCPDQNGSGGAREGSPTSEYDKAPLSESVQVGSDIVNDGSVFSAGDSHRSNKEVPGSCGNQLFGLGADNSGVPSPP RPTRLERSRSFPNFRSASLASGAHTGYLSGKSKSCDDLRGLDMGWKDLPVHEAGMQSIHDKDCRSEGNNFENLPDDVYDSYDYSSPAKDWVMPVADEDEN LAEEQLERVGGSSMQQPGEYPNEDFRFRRIKAWVNDLHSCGPVDEVVVLPGIDELVSTEPSTVSGRPTTVVKVDDKMTLETPVFEFFAARITAGVLPRGL HMLNLAKNNISTIEGLRELTRLRVLDLSYNRIFRIGHGLGSCSSLKELYLAGNKISEVEGLHRLLKLTVLDLRFNKLSTTKCLGQLAANYSSLQAISLEG NPAQKNVGDEQLKKHLQGLLPHLVYFNRQATKAGTLKDAADRSVRLGISSNKSVRKAGHGVTASRALSSSTHGGRASTSSPKRSKGRHVKLPPSGTGRPS GHARPPVQGLDLGGRVVDFRAELAMTRSKSEGNMGPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03260			Outer arm dynein light chain 1...		Lus10039729 [exp]	0	1
AT4G03260			Outer arm dynein light chain 1...		Lus10018514 [exp]	1.0	0.8622
AT3G55140			Pectin lyase-like superfamily ...		Lus10025290 [exp]	2.4	0.7802
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10030303 [exp]	2.8	0.7228
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	6.5	0.7771
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Lus10035003 [exp]	7.4	0.7524
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	10.0	0.7184
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002347 [exp]	11.2	0.6987
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10031419 [exp]	13.3	0.7646
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10039278 [exp]	17.7	0.6518
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10037636 [exp]	21.5	0.6930

Compare expression of checked genes

Lus10039729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.