Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11360 203 / 1e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) AT4G27320 186 / 5e-58 ATPHOS34 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT5G54430 182 / 2e-56 ATPHOS32 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G21210 124 / 9e-32 zinc ion binding (.1) AT3G17020 44 / 3e-05 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G62550 43 / 5e-05 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G03270 42 / 0.0002 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031594 [exp] 237 / 2e-77 AT1G11360 257 / 2e-86 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10033749 [exp] 230 / 8e-75 AT1G11360 245 / 1e-81 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10037867 [exp] 168 / 7e-49 AT1G11360 244 / 1e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10038561 [exp] 143 / 1e-41 AT1G11360 224 / 7e-74 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10018515 [exp] 98 / 2e-25 AT1G11360 127 / 9e-38 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10016900 [exp] 49 / 3e-06 AT3G17020 229 / 1e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10037761 [exp] 43 / 5e-05 AT3G17020 224 / 4e-76 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119400 [exp] 211 / 4e-67 AT1G11360 164 / 2e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.011G039800 [exp] 209 / 5e-67 AT1G11360 269 / 3e-91 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.013G150200 [exp] 201 / 6e-64 AT1G11360 209 / 1e-67 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.011G125500 [exp] 192 / 7e-60 AT5G54430 237 / 3e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.001G409100 [exp] 178 / 4e-55 AT5G54430 226 / 2e-74 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.013G009800 [exp] 49 / 7e-07 AT3G62550 172 / 2e-55 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.005G015200 [exp] 42 / 9e-05 AT3G62550 156 / 4e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.006G092700 [exp] 39 / 0.0009 AT3G53990 207 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10039730 pacid=23165260 polypeptide=Lus10039730 locus=Lus10039730.g ID=Lus10039730.BGIv1.0 annot-version=v1.0 ATGTTCCACAACGCTATTTCCTCCCAGTGTATTTCTCCTCCTTCATTTCTAGAGTGTCCGTCACCTGAAATTCAAAACCGATTCTCACTCAACAAAACCC TTTCTTCACCGCCGGCCGCCGCCGCAATGGCATCGCCGCAGAAGCAACCGGAATCGGACCTCCCAATCCCGTCCCTCCCATCCCTCCGCACCCGCCCCAC CGCCTCCCCTCGCAGCGGAAGCTTCTCCTCCTCTCAAGCAGCTGCCGCCACTCCAACCGCCGGAGCAAAGCGCCGCATCGCGATCGCCGTCGATCTAAGC GACGAGAGTGCGTACGCAGTAAACTGGGCGGTCCAGAACTACCTCCGCCCGGGGGACGCCGTCATACTCCTCCACGTCCGCCCGACATCCGTCCTGTACG GAGCCGATTGGGGATCGATCAAAGTCCAGATCAACAACACGGTCGACGACGGAGACGACATAGCGGACCAGAAGAAGCTCGAGGACGACTTCGACAACTT CACCACCACCAAGGCGAGCGCCCTGGCGCAGCCGCTGGTTGACGCCGGGTTTCCGTTCAAGATCCACATAGTGAAGGATCATGATATGAAGGAGAGGCTG TGTTTGGAAGTTGAGAGGCTAGGGTTGAGCGCTGTGATTATGGGGAGCAGAGGATTTGGAGCTGCGAGGAGGAGCGGTAAAGGGAGGTTAGGGAGTGTTA GTGATTACTGTGTTCATCACTGTATTTGTCCTGTGGTTGTTGTAAGGTATCCGGATGATAAGGATGGAGAAAGTGAAGATTTGAAGATAGGAGCTTCTGC TTCTGCTGCTGAGCTTCTTCCAGTGCCAGAGGTGGAACAGGAAGAGAAAGGTTTGAATCAATGCATTTGCTCAACTGTTTGA
AA sequence Show only first row Show all	>Lus10039730 pacid=23165260 polypeptide=Lus10039730 locus=Lus10039730.g ID=Lus10039730.BGIv1.0 annot-version=v1.0 MFHNAISSQCISPPSFLECPSPEIQNRFSLNKTLSSPPAAAAMASPQKQPESDLPIPSLPSLRTRPTASPRSGSFSSSQAAAATPTAGAKRRIAIAVDLS DESAYAVNWAVQNYLRPGDAVILLHVRPTSVLYGADWGSIKVQINNTVDDGDDIADQKKLEDDFDNFTTTKASALAQPLVDAGFPFKIHIVKDHDMKERL CLEVERLGLSAVIMGSRGFGAARRSGKGRLGSVSDYCVHHCICPVVVVRYPDDKDGESEDLKIGASASAAELLPVPEVEQEEKGLNQCICSTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11360			Adenine nucleotide alpha hydro...		Lus10039730 [exp]	0	1
AT3G05500			Rubber elongation factor prote...		Lus10029892 [exp]	1.0	0.8639
					Lus10017454 [exp]	1.4	0.8549
AT4G29350		PRF2, PFN2, PRO...	profilin 2 (.1)		Lus10012936 [exp]	2.4	0.8455
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10016948 [exp]	3.9	0.8119
AT3G52710			unknown protein		Lus10022708 [exp]	4.0	0.8146
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10020390 [exp]	6.0	0.7754
AT5G56600		PRF3, PFN3	profilin 3 (.1.2)		Lus10043040 [exp]	8.1	0.7955
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10018222 [exp]	9.7	0.7393
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032417 [exp]	10.2	0.7595
AT1G11360			Adenine nucleotide alpha hydro...		Lus10031594 [exp]	14.0	0.7861

Compare expression of checked genes

Lus10039730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.