Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11300 1073 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11330 600 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21390 592 / 0 B120 S-locus lectin protein kinase family protein (.1) AT4G21380 589 / 0 ARK3 receptor kinase 3 (.1) AT1G11340 587 / 0 S-locus lectin protein kinase family protein (.1) AT4G27290 583 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 575 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 573 / 0 ARK1 receptor kinase 1 (.1) AT1G61610 571 / 0 S-locus lectin protein kinase family protein (.1) AT4G11900 563 / 3e-180 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018516 [exp] 2006 / 0 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10028782 [exp] 1111 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039767 [exp] 1087 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039733 [exp] 1076 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 887 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10033743 [exp] 840 / 0 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10025891 [exp] 795 / 0 AT4G21380 593 / 0.0 receptor kinase 3 (.1) Lus10031603 [exp] 764 / 0 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033741 [exp] 747 / 0 AT4G21380 576 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G134900 [exp] 669 / 0 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014700 [exp] 666 / 0 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014900 [exp] 658 / 0 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 645 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120300 [exp] 641 / 0 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.013G150900 [exp] 639 / 0 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 632 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 632 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 624 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 618 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10039731 pacid=23165216 polypeptide=Lus10039731 locus=Lus10039731.g ID=Lus10039731.BGIv1.0 annot-version=v1.0 ATGGCCCAACTACTCCGGCTGAACTTTCCGACCATCGTCGTCTTTACTTGCTTGCTTCTCACCACCACCACCCGTCTCTGCCTGGGAGCTGACAGGATCT CTCAGAACGAAACGCTCACAGCAAACCAGACGCTAATCTCCTCAAACGACAGATTCGAATTGGGTTTCTTCAATCCAGGTAACTCCTCATCTTACTACCT CGGAATCTGGTACTATCAGGTCTCCATTAGGACAGTAGTGTGGGTTGCAAACAGAGAATCCCCTGTTCCCAACAACTCCTCCGCCGAGCTCAGAATCTCC GGCGGCGCCTTAGCTCTGTTCTTCAACCAATCCCAGATCTGGTCCACTCCGACGACGGTTTCTTCTTCTTCTCCGACGGAAGCTGTTCTTCTCGAAGACG GAAACTTCGTGTTAAGAAAAACAGATTCCTCCGAAATTGTGTGGCAGAGCTTTGAACATCCGACGAACATTTTCCTCCCGGAAGCCAAGCTCAGCCGCAG CAAAATCACTGGCGAGCACACAACTGTGGTTCCCTGGAGAGGAAATAACGATCCCACCCCTGGGAATTTCTCCCTGCAGTTAGACCCCAACGGTACGGAT CAGTTTGTTATAATCAAGGACCAATCCTCGTTGTACTGGAACAGTGGGGTTTGGAATGGGAGATTCTTCACATCAGTTCCTGAGCTGAGAACGAATTTCT CATACAATTTCTTCTTCATCGACAATGAAAACGAAACCTACTTTACTTATTCCTTGTACAACAAGTCAAGCATCTTCCATGTCGCAATAACCGAAGGAGG TAACCTCCAGCTGCTGTCATGGATGGAAGCTACTCAGAGATGGTTCTTAGCTTGGTCGAGGCCGAAATTACAGTGTCAGGTTCAGCTGTACTGCGGTGCA TTCGGATCGTGTGATGACGAATCCACCCCTACTTGTCGTTGTCTCGAAGGATTCGTTCCAAAATCGAGCGAAGAGTACGATTCCAACATATTCTACAGCG GATGCATTCGAAGATCCGAGCTTCAATGTGGTAGGAGCAACAATAACACTGATAGGTTCATCAGAGGGTATGCGGTTAGGGATACGGTTTCGGGATCCCC TGCTTCGAGATCGGCTGCGAATGTAGAGGAATGTCAATCGGTCTGCGAGGATACGTGTTCATGTAACGCGTATGCTTTCGAAAACGGGAGGTGCTCGGTT TGGAATGGTGAGGTGTATGACATGTTTCGGCTTGGTAATGGTTCGTCTGGTGGTGTGCCGATTTTCGTTAGGGTTGCTGCTGAGGTAGCGAGTGGTGGTT CGGGTTCGAAGAAGGGTGTTGTTCTTGGTGCTGTGCTTGGATGTCTGGTGGCAGCTGCGATTGTCGGGTTTGTAATGTTCGTAGCCTTCAGGCGGTATCA GAGGAGAAAGATGGATCGAAATATCGAGGAGAATTTCAACATTGCGAATGGTGACGAGGATGACAACACAAAGCTGACGTTCTTCAGCTTTAAGAACGTT TTAGCCGCCACTGATAACTTCTCCGAAGCGAACAAGCTTGGAGAAGGCGGTTTCGGTCCTGTCTATAAGGGAGTTCTACTGCATGATCAAGAAGTGGCAA TAAAACGGCTTTCGAAGAAATCAGGGCAAGGGTTAGAGGAGTTCATGAACGAGCTGAGACTCATTGCGAAGCTGCAGCACACTTACCTAGTCAGGCTGTT GGGATGCTGCGTCGAGAGGGAGGAGAAGATACTGATCTACGAGTATTTACCGAATCGGAGCCTGGATAAGTTCCTCTTCGACCCGGCTGCAAAAACCGAT TTGGATTGGCTGATGCGGATCAAGATCATCGAAGGGATAGCTCAGGGACTTCTGTACATCCACAAGTACTCGAGATTGAAGGTCATCCACAGAGACCTGA AGGCCAGCAATGTTCTTCTGGATGCTGATATGAACCCCAAGATCTCGGATTTTGGAATGGCCAGGATCTTCGGGATCGATCAAGCTGAAGCTAATACCGT CCGCATCGTTGGAACATATGGATACATGTCACCAGAATACGCAATCTACGGGTCATTCTCGGAGAAGTCAGATGTGTTCAGCTATGGCGTACTACTTTTA GAGATCGTTAGCGGGAGGAGGAACACCGATTTCTACGATCGCGAAACTCCGTTCTCCCTTCTTTGCTGGGCATGGGAGCTATGGAAAGAAGGGAAACCGG AAGAGCTGATCGATCCGGCGGTGAAGGACGCCAACATCAATGCTCCGCAAGCTGTGAAGTTCGTTCATGTCGGTCTGCTGTGCGTGCAACAGGATCCAGC TGACAGGCCGACCATGTCATTAGTAACTCAGATGCTGTCGAGCAATTACTCGCAGTCGTTTCCGTTGCCTGGAGAACCGGCCTTCAACATCGGGAGAGCT GCTGTCGGAGGAAGTAGTAGCGTTGGATCGGTTCCTACCGATATTTCGAATAACCAGATCACGATTACCATGCCGGTTGCTTTCATGGCGGCTAATCCAT GGCTAAAATTTCCAGCCATAATCACCATTTTCTTCATTTCCTTTTCTCTGAAAGCACATTTCTGTCATGGAGCTGACAGGATTACTCAGAACCAATCTCT GTCTGCACACCAAACCCTGATCTCATCAGGGAGCAGATTCGAGCTCGGTTTCTTCAAGCCCGGGAACTCATCAAACTACTACCTCGGAATCTGGTTCCAC AAAGTGAGTAGAGCAGTGTGGGTAGCCAACAGAGAATCGCCGATTTTCAACCCTTCGTCTACTGTGTTAAGATTCTCGGACGGGAATCTAGCTCTGTTCA GCAATGAGTCCGGCCAAGTTCCCATTTGGTCTACCAATTCTTCGACCCCTTGTACGGAGGCTGTTCTTCAGGACAATGGGAATCTCGTGTTGAAGGGGGG ATCATCTGATGATGAGATCCTGTGGCAGAGCTTTGAACACCCGAGTGATACGTTGCTTCCTGGTGCGAAGCTCGGGCACAACAAAATCACGGGGAGGTAC ATTACTATGGTTCCTTGGAAGAGTGAGGACGATCCAGCTCCAGGGGATTTCACCGTGCAGCTGGATCCGAACGGGACGAATCAGCTCGTTGTTATCACGA ACAAGTCCACCTTGCACTGGACTAGTGGGCTTTGGAACGGGCGTTTCTTCAGCTCGGTTCCTGAGATGATGTGGAAGAACATTTATGACTTTGTCTACAT TGATAACGAGAACGAGGCCTACTACGCATATTCCGTGCTCAACAAGTCACTCATCTTTCGCAAGTCGGTGAGTAAAGATGGGAACTTTCAAGTATTGCTA TGGAATCAGAACTGGAATCTGATCTGGTCACAACCCAGGTCGCAGTGCGAAGTCCGACAATACTGTGGTGCTTTCGGGTCTTGCCACGACGGATCCTCTC CTTCCTGTTATTGCGTTGAAGGGTTTGTTCCAAAGTCCGCAGATGAATACAGCTCGAACGTGTTCTACAACGGCTGCATCAGAAAATCTGATGTTCAATG TGGGGATTCGAGAAACGGGACAATCAAGAAGCTGCCTCTTAAAGATAAGTTCCTTCAGGGCTATGCAGTAAGTGATAACACGTCAGGATCTCCAGCCTAT AGATCGCTTAGGAATGTTCAAGAGTGTGAATCCACTTGCCTCGACAGTTGCTCCTGCTGTGCATATGCTTACCAAGACGATACATGCTCGATTTGGTCGC AAGAAGTTTACGATATCCATAGCCTTGCTGATGACCCTACCGGAGTACCAATTTATGTAAGAGTTGGTACTAGTACTGAACTCCCAAGTTCGGGTACTAA GAGAGTGGTTCTTGGTGCTGTGTTTGGCTCGATAGCCGCGGTTGTTCTCATCGGCTTTCTATCGATTGCAGTATCGAGATGGTACCACAGGCACAAGCTA GGAAATAATGATGAGAACAGCTACTTCAACGGGGAAGGAGGCGAAGAAAACAATACGAAGCTGACATTCTTCAGCATCAAGACTGTATTAGCTGCAACAG ACAACTTTTCTGAAGCTAACAAATTAGGAGAGGGCGGTTTCGGCCCAGTCTATAAAGGAGTTTTGGTTCCTGATGATCAAGAAGTGGCTGTAAAAAGGCT TTCGAAGAAATCGGGACAGGGGCTAGAGGAATTCATGAATGAGCTGAAGCTCATTGCAAAACTCCAACACACTTACCTTGTTAGGCTGTTAGGCTGCTGT GTTGAAAAGGACGAGAAGATACTGATCTACGAATACTTGCCGAATCGAAGCTTGGACAAATTCCTATTTGATTCACCTGCAAAAGCAGATTTGGATTGGC TTACGCGAATTAAAATTATAGATGGCATAGCTCAAGGGCTGCTGTACATCCATAAGTACTCGAGACTAAAGGTTATTCACAGGGACATGAAGGCAAGCAA TGTTCTGCTGGATGCTGAAATGAATCCCAAAATTTCGGATTTCGGAATGGCAAGGATTTTCAGGATTGGCCAAGCAGAAGCTAAAACCAATCGAATAGTT GGAACATATGGCTACATGTCCCCAGAATATGCAATCTACGGGAAGTTCTCGGAGAAATCAGATGTGTTCAGCTACGGGGTGTTGCTGTTGGAGATTGTGA GCGGAAGGAGGAACAAAGATTTCAATCAATCCGAAATTCCATCCTCCCTTCTTTCTTGGACATGGGAGCTATGGCAAGAAGGAAAACCAGAAGAGCTAAT CGATCCATCAGTGAAGGATACTACCTGCAGTGATACTGCAGAAGCGGTGAAGTTCATCCACATTGCCCTTCTATGCGTGCAAGAAGCTCCATCTAACAGG CCAACTATGGCTTCAGTAGCTCAGATGTTATCAAGCAATTATCCAGAGTCATTTCCATTGCCAAAAGAACCGGCCTTTACGACGACGAGAGCTGTTCTTC CTAATAATTGTTCAAACAATCAGATGTCAATGACCTTATCAGTTGGTAGATAG
AA sequence Show only first row Show all	>Lus10039731 pacid=23165216 polypeptide=Lus10039731 locus=Lus10039731.g ID=Lus10039731.BGIv1.0 annot-version=v1.0 MAQLLRLNFPTIVVFTCLLLTTTTRLCLGADRISQNETLTANQTLISSNDRFELGFFNPGNSSSYYLGIWYYQVSIRTVVWVANRESPVPNNSSAELRIS GGALALFFNQSQIWSTPTTVSSSSPTEAVLLEDGNFVLRKTDSSEIVWQSFEHPTNIFLPEAKLSRSKITGEHTTVVPWRGNNDPTPGNFSLQLDPNGTD QFVIIKDQSSLYWNSGVWNGRFFTSVPELRTNFSYNFFFIDNENETYFTYSLYNKSSIFHVAITEGGNLQLLSWMEATQRWFLAWSRPKLQCQVQLYCGA FGSCDDESTPTCRCLEGFVPKSSEEYDSNIFYSGCIRRSELQCGRSNNNTDRFIRGYAVRDTVSGSPASRSAANVEECQSVCEDTCSCNAYAFENGRCSV WNGEVYDMFRLGNGSSGGVPIFVRVAAEVASGGSGSKKGVVLGAVLGCLVAAAIVGFVMFVAFRRYQRRKMDRNIEENFNIANGDEDDNTKLTFFSFKNV LAATDNFSEANKLGEGGFGPVYKGVLLHDQEVAIKRLSKKSGQGLEEFMNELRLIAKLQHTYLVRLLGCCVEREEKILIYEYLPNRSLDKFLFDPAAKTD LDWLMRIKIIEGIAQGLLYIHKYSRLKVIHRDLKASNVLLDADMNPKISDFGMARIFGIDQAEANTVRIVGTYGYMSPEYAIYGSFSEKSDVFSYGVLLL EIVSGRRNTDFYDRETPFSLLCWAWELWKEGKPEELIDPAVKDANINAPQAVKFVHVGLLCVQQDPADRPTMSLVTQMLSSNYSQSFPLPGEPAFNIGRA AVGGSSSVGSVPTDISNNQITITMPVAFMAANPWLKFPAIITIFFISFSLKAHFCHGADRITQNQSLSAHQTLISSGSRFELGFFKPGNSSNYYLGIWFH KVSRAVWVANRESPIFNPSSTVLRFSDGNLALFSNESGQVPIWSTNSSTPCTEAVLQDNGNLVLKGGSSDDEILWQSFEHPSDTLLPGAKLGHNKITGRY ITMVPWKSEDDPAPGDFTVQLDPNGTNQLVVITNKSTLHWTSGLWNGRFFSSVPEMMWKNIYDFVYIDNENEAYYAYSVLNKSLIFRKSVSKDGNFQVLL WNQNWNLIWSQPRSQCEVRQYCGAFGSCHDGSSPSCYCVEGFVPKSADEYSSNVFYNGCIRKSDVQCGDSRNGTIKKLPLKDKFLQGYAVSDNTSGSPAY RSLRNVQECESTCLDSCSCCAYAYQDDTCSIWSQEVYDIHSLADDPTGVPIYVRVGTSTELPSSGTKRVVLGAVFGSIAAVVLIGFLSIAVSRWYHRHKL GNNDENSYFNGEGGEENNTKLTFFSIKTVLAATDNFSEANKLGEGGFGPVYKGVLVPDDQEVAVKRLSKKSGQGLEEFMNELKLIAKLQHTYLVRLLGCC VEKDEKILIYEYLPNRSLDKFLFDSPAKADLDWLTRIKIIDGIAQGLLYIHKYSRLKVIHRDMKASNVLLDAEMNPKISDFGMARIFRIGQAEAKTNRIV GTYGYMSPEYAIYGKFSEKSDVFSYGVLLLEIVSGRRNKDFNQSEIPSSLLSWTWELWQEGKPEELIDPSVKDTTCSDTAEAVKFIHIALLCVQEAPSNR PTMASVAQMLSSNYPESFPLPKEPAFTTTRAVLPNNCSNNQMSMTLSVGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	0	1
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	1.4	0.9655
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021023 [exp]	2.8	0.9548
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	2.8	0.9519
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10028532 [exp]	3.6	0.9402
AT4G38640			Plasma-membrane choline transp...		Lus10034492 [exp]	6.5	0.9369
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	7.0	0.9468
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	7.1	0.9546
AT5G24430			Calcium-dependent protein kina...		Lus10008875 [exp]	7.3	0.9193
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10029370 [exp]	7.3	0.9186
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019328 [exp]	7.3	0.9345

Compare expression of checked genes

Lus10039731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.