Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19130 639 / 0 S-locus lectin protein kinase family protein (.1) AT4G00340 424 / 1e-136 RLK4 receptor-like protein kinase 4 (.1) AT4G11900 399 / 9e-127 S-locus lectin protein kinase family protein (.1) AT4G21380 387 / 3e-122 ARK3 receptor kinase 3 (.1) AT1G65800 371 / 3e-116 ARK2 receptor kinase 2 (.1) AT4G21390 370 / 5e-116 B120 S-locus lectin protein kinase family protein (.1) AT1G65790 364 / 8e-114 ARK1 receptor kinase 1 (.1) AT4G27290 363 / 9e-114 S-locus lectin protein kinase family protein (.1) AT1G11330 359 / 8e-112 S-locus lectin protein kinase family protein (.1.2) AT1G61380 357 / 3e-111 SD1-29 S-domain-1 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039762 [exp] 1113 / 0 AT2G19130 621 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 671 / 0 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 623 / 0 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031596 [exp] 615 / 0 AT2G19130 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033748 [exp] 612 / 0 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 464 / 6e-152 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039733 [exp] 460 / 2e-150 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018516 [exp] 457 / 1e-142 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039731 [exp] 455 / 1e-141 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119200 [exp] 728 / 0 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 713 / 0 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 701 / 0 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.014G086900 [exp] 483 / 5e-159 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.001G414077 [exp] 426 / 1e-137 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G134900 [exp] 412 / 6e-132 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 410 / 2e-131 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014700 [exp] 406 / 2e-129 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 400 / 1e-127 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 399 / 3e-127 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10039732 pacid=23165328 polypeptide=Lus10039732 locus=Lus10039732.g ID=Lus10039732.BGIv1.0 annot-version=v1.0 ATGCTGTATCTTCTGATTCTTCTGTGTTTACTCTGCCTCAACAAGCTTGACCCTTGCCATGGAATCGATAGGATCACTGCAAATCAATCACTCACCGGCG ACGAGACTCTCGTCTCCGCCGGAGGGATCTTCGAATTGGGGTTCTTCAAGCCAGGGAAATCAGAAGAGTACTACTACATCGGAGTATGGTACAAACAAGT ATCTCCACGGACGGTGATTTGGGTTTGGAACAGATACCGTCCAGTTTCCAACAGGTTCAATTCCGAGCTCAAGATTTCCGACGACGGGAGGCTAGTTCTC GTCGAAGGCGGGTCAACTTTAGTTCGGTCAACCTACATTCGGTCAACGTCGTCCTCATTCAACGCAGTTCTCCTCGACCAGGGAAACCTCGTCGTCATAC CAACTAATGGCTCCTCGTCTTCTCCAATCTGGCAGAGCTTCGATCAACCTAGCGATACCTTGGTTCCCGGTAGGAAGATTGGATTCAACAAGATTACTGA TGACGAAGTAGTTCTCACTTCCTGGAGGAACAGAGCAAATCCTACTGCTGGTCCATTCACTCTCAAGCTGGGTTCAAATCGATCGCTTGAATGGAACATG GAGAGAAATTTCTTGCTGGGTGAAAGACGGATTATAGAATTGAATTCCATGAACAACTTTGTTTACGTGGATGATCGGAATGGAAGCTACGTCACTCTTT CTGATCATCGACGTAACGGTTCCCTGTTTTCTCGGTACGTTTTAGATGTAGGAGGGCAAATTCAGCTTCTATTATGGCTGGAATCCACCCAGCAGTGGGT GTCAATCTGGCAAAATCCTACATCTAAATGTGAAATGAGTAGCTACTGTGGTGCTTATGGGAGTTGTGAGGAGAAATCCAGTCCAATTTGTCATTGTTTG GATGGGTTTGTTCCACAATCTCTGGTTGATTATAGCTCTGAGGCCTTCTACGATGGCTGCTTAAGGAGATACCCTCTTCAGTGCCAGAAACCTGACTGGT TTTTGCCACATTACAATGTGGGGTTGCCTAGCACTCCATTGATGATATCATCAGCTACAAGTTCAGATGATTGCGAGGCGAAATGTCTGATATCTTGCAG CTGCAGTGCTTATTCCTACAGTGGAAACCAATGCTCCCATTGGGATGATTTATTGTTTAATCTGCAGCAACTGGATGTCCCAAATGGGAAAACCATCTTC ATCAAACTTGCAGCTAACGAATCCTCATTTCTTGACAACGACATTTATCGAAGAAAGAACAACAAGATCAGGATCGTGATTGGATCTGTGGCAGGTTCAA TGTTGCTGCTAGTTCTTGTTGCATTGACAATCCTGAGATGGAGGAGGGATAAGATGCCTGGGAAATTAATGGAAGGGTTTTTGGTGGCTTTTACACACAG ACATTTGAAGATTGCCACCAAGAATTTCTCACACAAGTTGGGGGAAGGAGGGTTTGGTTCTGTCTACAAAGGAACACTCCCCGATTCGAGCATTATAGCC GTGAAAAAGCTGCAGAGCATCAATTCCAGGCAAGCTGAAAATCGCAAGCAATTCCTTGCAGAAGTCAGGACTCTCGGCGCAATCCAACACGTTAATCTGG TTGGCCTTAGAGGGTTTTCATCTGATAACAATACTATGATGTTGGTCTATGATTACATGCCAAACGGTTCGGTATCGTCCCATTTGTTCGATCCTTCAAA GATCCTCGCTTGGAACATGCGGTACAACATTGCATTGGGAACAGCGAGAGGTTTAGCTTATATACACGAAAAATGCAGAGAATGTATAATCCACTGCGAC ATTAAACCGGACAATGTGCTATTGGATTCTGAGTTTCAACCCAAAGTCGCAGACTTTGGCCTGGCAAAGCTCTTTGGGAGAGATTTCAGCCGGGTGCTAA CCACCTTGAGGGGAACTATCGGGTACATGCCGCCTGAGTGGATTTCGGGTGAGGCGATTACTGCAAAAGCTGACGTTTACAGCTACGGGATGGTGCTGTT GGAGCTGGTGTCCGGAATGAGAAACTCGCAACGACATGTTTGTGTCGGTCATTACTTTCCGGTTTGGGTAGCGGATGTTTTAAGCGAAGGTGGCGATCTG GCTGAGGTGCTGGATCCAAGGTTAGAAGGGAATGCTGATGGTGAAGAGTTGGAAAGAGTCTGTAGAGTTGCTGTTTGGTGCATTCAGGATGATGAAAGTC AACGTCCGAGTATGAGTCAGGTAGTGTACATTCTTGAGCAGGTTTTGGAAGTGGGAATTCCTCCTGTTCCGAGTATTCTTCAGAGATATGTTAATCCTGA TGACTGA
AA sequence Show only first row Show all	>Lus10039732 pacid=23165328 polypeptide=Lus10039732 locus=Lus10039732.g ID=Lus10039732.BGIv1.0 annot-version=v1.0 MLYLLILLCLLCLNKLDPCHGIDRITANQSLTGDETLVSAGGIFELGFFKPGKSEEYYYIGVWYKQVSPRTVIWVWNRYRPVSNRFNSELKISDDGRLVL VEGGSTLVRSTYIRSTSSSFNAVLLDQGNLVVIPTNGSSSSPIWQSFDQPSDTLVPGRKIGFNKITDDEVVLTSWRNRANPTAGPFTLKLGSNRSLEWNM ERNFLLGERRIIELNSMNNFVYVDDRNGSYVTLSDHRRNGSLFSRYVLDVGGQIQLLLWLESTQQWVSIWQNPTSKCEMSSYCGAYGSCEEKSSPICHCL DGFVPQSLVDYSSEAFYDGCLRRYPLQCQKPDWFLPHYNVGLPSTPLMISSATSSDDCEAKCLISCSCSAYSYSGNQCSHWDDLLFNLQQLDVPNGKTIF IKLAANESSFLDNDIYRRKNNKIRIVIGSVAGSMLLLVLVALTILRWRRDKMPGKLMEGFLVAFTHRHLKIATKNFSHKLGEGGFGSVYKGTLPDSSIIA VKKLQSINSRQAENRKQFLAEVRTLGAIQHVNLVGLRGFSSDNNTMMLVYDYMPNGSVSSHLFDPSKILAWNMRYNIALGTARGLAYIHEKCRECIIHCD IKPDNVLLDSEFQPKVADFGLAKLFGRDFSRVLTTLRGTIGYMPPEWISGEAITAKADVYSYGMVLLELVSGMRNSQRHVCVGHYFPVWVADVLSEGGDL AEVLDPRLEGNADGEELERVCRVAVWCIQDDESQRPSMSQVVYILEQVLEVGIPPVPSILQRYVNPDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19130			S-locus lectin protein kinase ...		Lus10039732 [exp]	0	1
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	7.7	0.8116
AT5G42120			Concanavalin A-like lectin pro...		Lus10042795 [exp]	7.7	0.8068
AT5G35735			Auxin-responsive family protei...		Lus10012350 [exp]	8.1	0.8361
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10000539 [exp]	9.4	0.8365
AT4G33780			unknown protein		Lus10035665 [exp]	11.5	0.8274
					Lus10013622 [exp]	12.6	0.7880
AT5G28830			calcium-binding EF hand family...		Lus10009175 [exp]	12.8	0.7840
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10042798 [exp]	18.9	0.8347
AT3G11760			unknown protein		Lus10021254 [exp]	19.1	0.8254
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10012031 [exp]	21.2	0.7901

Compare expression of checked genes

Lus10039732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.