Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 596 / 0 ARK3 receptor kinase 3 (.1) AT4G27290 583 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 566 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 565 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 562 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G65800 560 / 0 ARK2 receptor kinase 2 (.1) AT4G11900 559 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 554 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 548 / 0 S-locus lectin protein kinase family protein (.1) AT1G61380 536 / 2e-179 SD1-29 S-domain-1 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028782 [exp] 1366 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039767 [exp] 1122 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018516 [exp] 1036 / 0 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039731 [exp] 1036 / 0 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10033743 [exp] 848 / 0 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10025891 [exp] 786 / 0 AT4G21380 593 / 0.0 receptor kinase 3 (.1) Lus10033741 [exp] 769 / 0 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10031603 [exp] 753 / 0 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007603 [exp] 597 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014700 [exp] 687 / 0 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014900 [exp] 684 / 0 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G134900 [exp] 676 / 0 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150900 [exp] 642 / 0 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119200 [exp] 632 / 0 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120300 [exp] 632 / 0 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.013G149500 [exp] 621 / 0 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 620 / 0 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 619 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 619 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10039733 pacid=23165007 polypeptide=Lus10039733 locus=Lus10039733.g ID=Lus10039733.BGIv1.0 annot-version=v1.0 ATGGCTTCTCATCTCTGGCTCAACTTGCCGGCCATCATTTTCATTTGCTTATCTCTCAAACCCCATTTCTGTCTAGGAGCTGACAGGATAGCTCAGAACC AATCTCTGTCTGGAGACCAAACCTTGGTCTCAGCAGGAAGCAAATTTGAACTGGGTTTCTTCAAGCCAGGTACCTCATCAAACTATTACCTTGGAATTTG GTATTATCAAGTCCCTAGCAGAACAGTAGTTTGGGTTGCAAATAGAGAATCCCCCATTTTCAACCATTCCTCTACTGAATTGAGAATCTCCGGCGGTAGT TTATTCCTGTTGAGCAGGTTCAAGGTCCCAATTTGGTCCACAGCTGCTTCCCTTTCATCTGCTTCAGTGGAAGCTGTACTTCTCGACGATGGGAATCTTG TGTTGAGAAGTGTGGTTTCTTCTTCTGAAATTTTGTGGCAGAGCTTTGATTACCAAACTGATACATTTCTTCCTGGTGCCAAGCTTGGGCGCAACAAGAT CACGGGTAAGTACACAACTCTGGTTTCGTCGAAGAGCATTGACAATCCTGCACCTGGAAGATTCTCGCTGCAGATTGACCCAAATGGTACTAACTCGTTT GCAATTTTAAGGCAAACGTCTTCCTTGTATTGGACTAGTGGGCCTTGGAATGGCATTATCTTCAGCTTAGTTCCTGATCCGATGAGATTGAATTTCATTT TCAATTTTTCATTTGTTGACAATGAGAACGAGACCTATTTCACTTATTCGTTGTACAATCAGTCCATGATAGCTCGTCTGGTGATGAGTGATGGAGGTAA CATCCAAGCACTGATATTGTTGGAGATCGGTCATCAGTGGTCTTTGTTCTGGTCACAGCCCCGAATGCAATGTGACGTTGAAGGCTACTGTGGTGCAGTC GGGTCTTGTGATGATCGATCCCAGCCTTTCTGCCATTGCCTGGAAGGATTTGTTCCAAATTCTACGGATGAATACAGTTCAAATGTGTTTCGTGGCGGTT GCATCAGGAAATCTAATATTCACTGCGGGAATGCGAGTATTGGGATGAGTACTGATGAGTTCCTTCCAGGGTATGTAGTAAAGGACAGAAGCTCAGATTC TCGAGCCAATAATTCAGCTAGGAATGCTCAAGAATGTGAATCGATTTGTTTGAGCCGTTGCTCCTGTACTGCATATGCTTATGAAGGCGGTAGATGCTCA ACTTGGTATGGAGATGTATTTGATATTTATAAACTTGATTATATCTCTGCTGGACGACAAATTTATGTAAGAGTTGCTGCTGAAATTCAAAATTCCGGAA CTGCTGAAATTCAAAATTCCGGAACCAAGAGAAAGGTTATTGCTGCTGTGTTTGGCTGTTCAGCTGCGGTTGTTCTTATCGCCCTTTTACTGTTTGCGGT ATCGAGGTACCGTCGGCACAAGCTAGGAAAAGACATTGCGGAGAGCTACAATATTGTGAATGGAGATGAAGACAACAATACAAAGTTGACGTTTCTCAGC ATTAAGAGTGTATTAGCTGCAACAAACAACTTTTCTGAAGCTAACAAACTAGGAGAAGGCTGGTTCGGGCCTGTTTATAAAGGAGTTCTGCTTCCCGGTG ATCAAGAAGTAGCCGTGAAAAGGCTTTCGAAGAAATCGGGACAAGGGTTAGAGGAATTCATGAATGAGCTGAAGCTCATAGCAAAGCTCCAACACACTTA TCTTGTTAGGCTGTTAGGTTGCTGTGTTGAAAAGGATGAGAAGATACTTATCTACGAGTACCTGCCTAATCGAAGCTTGGACAAATTCCTCTTTTATTCG TACGGGAAAGCTAAGTTGGATTGGCTGACGAGAATTAAGATTATAGAAGGAATAGCTCAAGGACTGTTGTACATCCACAAGTACTCAAGATTGAAGGTCA TTCACAGGGACATCAAGGCAAGCAATGTGCTGCTGGATGCTGAAATGAACCCCAAAATTTCGGATTTCGGAATGGCGAGGATTTTCGGGATTGGTCAGGC AGAAGCCAACACCAACCGTATAGTGGGAACATATGGCTACATGTCTCCAGAATACGCGTTCTACGGGCAGTTCTCCGAGAAATCAGACGTATTCAGCTAC GGGGTGCTGCTGTTGGAGATTGTGAGCGGGAGGAGGAACACAGATTTCTACGATTCCGAAACACCGTTATCCCTTCTTTGCTGGGCATGGGAGCTATGGA AAGAAGGTAAACCAGAAGATCTACTTGATCCAGCCTTGAAGAATACCTGCATTAATGCTCCAGAATCCGCGAAGTTCGTCCACGTTGGTCTGCTGTGCGT GCAAGAGGATCCAGCTGACAGGCCGACAATGGCTTATGTAGCTCATATGTTGTCAAGCAACGATTCTCAGTCGTTTCCATTGCCAGGCGAACCGGCCTAC ATCACAAGGAGAGCTGTTGTTGGAAATGGTGAGCAAGTTCCCGCCGTTTTTTCAAACAACCAATTGACACTGAGCTTGCCAACTGGTAGATAG
AA sequence Show only first row Show all	>Lus10039733 pacid=23165007 polypeptide=Lus10039733 locus=Lus10039733.g ID=Lus10039733.BGIv1.0 annot-version=v1.0 MASHLWLNLPAIIFICLSLKPHFCLGADRIAQNQSLSGDQTLVSAGSKFELGFFKPGTSSNYYLGIWYYQVPSRTVVWVANRESPIFNHSSTELRISGGS LFLLSRFKVPIWSTAASLSSASVEAVLLDDGNLVLRSVVSSSEILWQSFDYQTDTFLPGAKLGRNKITGKYTTLVSSKSIDNPAPGRFSLQIDPNGTNSF AILRQTSSLYWTSGPWNGIIFSLVPDPMRLNFIFNFSFVDNENETYFTYSLYNQSMIARLVMSDGGNIQALILLEIGHQWSLFWSQPRMQCDVEGYCGAV GSCDDRSQPFCHCLEGFVPNSTDEYSSNVFRGGCIRKSNIHCGNASIGMSTDEFLPGYVVKDRSSDSRANNSARNAQECESICLSRCSCTAYAYEGGRCS TWYGDVFDIYKLDYISAGRQIYVRVAAEIQNSGTAEIQNSGTKRKVIAAVFGCSAAVVLIALLLFAVSRYRRHKLGKDIAESYNIVNGDEDNNTKLTFLS IKSVLAATNNFSEANKLGEGWFGPVYKGVLLPGDQEVAVKRLSKKSGQGLEEFMNELKLIAKLQHTYLVRLLGCCVEKDEKILIYEYLPNRSLDKFLFYS YGKAKLDWLTRIKIIEGIAQGLLYIHKYSRLKVIHRDIKASNVLLDAEMNPKISDFGMARIFGIGQAEANTNRIVGTYGYMSPEYAFYGQFSEKSDVFSY GVLLLEIVSGRRNTDFYDSETPLSLLCWAWELWKEGKPEDLLDPALKNTCINAPESAKFVHVGLLCVQEDPADRPTMAYVAHMLSSNDSQSFPLPGEPAY ITRRAVVGNGEQVPAVFSNNQLTLSLPTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10039733 [exp]	0	1
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10015573 [exp]	3.0	0.7367
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008600 [exp]	12.3	0.7142
AT2G29040			Exostosin family protein (.1)		Lus10001578 [exp]	14.1	0.7087
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10039134 [exp]	16.2	0.7049
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10023633 [exp]	20.0	0.6993
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10007159 [exp]	21.6	0.6351
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	21.7	0.6994
AT5G57750			RING/U-box superfamily protein...		Lus10016542 [exp]	23.2	0.6602
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10004039 [exp]	29.2	0.6721
AT5G10695			unknown protein		Lus10042440 [exp]	30.5	0.6855

Compare expression of checked genes

Lus10039733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.