Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018519 [exp] 295 / 1e-102 ND / Lus10036438 [exp] 42 / 8e-05 ND / Lus10041112 [exp] 42 / 8e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141600 [exp] 53 / 2e-08 ND / Potri.002G058200 [exp] 52 / 6e-08 ND / Potri.005G204000 [exp] 50 / 2e-07 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10039737 pacid=23165183 polypeptide=Lus10039737 locus=Lus10039737.g ID=Lus10039737.BGIv1.0 annot-version=v1.0 ATGGCTATGGGGAATAATAAGAGGCGAAGATCATCACTTGATCAAACCGAGTCCACCGTCTCGAAGAATTCGAAGAACAAGAAGAACAACAACAACAGAG AAAAGGCGGCTACTATTATAAAAAGAGAGAAGAGCAATATTAGCGACGGGGTAGAGGTCCTTTTGCGACGGCCCAAAGTTTACATAACGGACATCTCGAA TTTCAAGACTCTTGTCCAGGAATTGACCGGTAATGGGGCTTTAGCGACGAAAACATCCGTTACTGTCGGTAATGGTCTGGTCAACCAATCAGAGAGTGAC AGCGTGGACACTTTCAGCCCGACAGCTTCCGTGGATGCATCGGTTGACTCGTCAAGTGACCAGACGGCGTCGTTTGGTCCGGATGAGATGATGATGATGA TGATGAACAAAAGTTTTTTGTACAGTGATGAGGAGTTGGCTTGCAAACCGACGTCGTCGGACGATCATTACGATTTGGCGGCGTGGGATGATCTTGAAGC TTTGATGCAAGATATGGAGGGTCAGGATCAGTTTCCACTATTCGAGTCGAGTAATTTACAAGGAAGTACCGAAATTCATCATTGTTATGAGGAGGATCTG AGCATCTACGATTACGATTTTTCGGGGGTGGTGTGCTGA
AA sequence Show only first row Show all	>Lus10039737 pacid=23165183 polypeptide=Lus10039737 locus=Lus10039737.g ID=Lus10039737.BGIv1.0 annot-version=v1.0 MAMGNNKRRRSSLDQTESTVSKNSKNKKNNNNREKAATIIKREKSNISDGVEVLLRRPKVYITDISNFKTLVQELTGNGALATKTSVTVGNGLVNQSESD SVDTFSPTASVDASVDSSSDQTASFGPDEMMMMMMNKSFLYSDEELACKPTSSDDHYDLAAWDDLEALMQDMEGQDQFPLFESSNLQGSTEIHHCYEEDL SIYDYDFSGVVC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039737 [exp]	0	1
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	8.5	0.7845
AT3G57990			unknown protein		Lus10000401 [exp]	10.4	0.7275
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002892 [exp]	11.9	0.8311
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10001110 [exp]	12.1	0.7639
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016224 [exp]	13.2	0.7734
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10025922 [exp]	16.9	0.7445
AT3G52160		KCS15	3-ketoacyl-CoA synthase 15 (.1...		Lus10000219 [exp]	17.5	0.7828
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	18.8	0.7479
					Lus10009363 [exp]	22.8	0.6744
					Lus10005608 [exp]	25.2	0.7472

Compare expression of checked genes

Lus10039737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.