Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03270 230 / 2e-73 CYCD6;1 Cyclin D6;1 (.1) AT1G70210 124 / 2e-32 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 115 / 1e-29 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 105 / 1e-25 CYCD4;2 cyclin d4;2 (.1) AT3G50070 99 / 3e-23 CYCD3;3 CYCLIN D3;3 (.1) AT2G22490 97 / 3e-22 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT4G34160 95 / 1e-21 CYCD3;1 CYCLIN D3;1 (.1) AT5G67260 94 / 2e-21 CYCD3;2 CYCLIN D3;2 (.1) AT4G37630 68 / 1e-12 CYCD5;1 cyclin d5;1 (.1.2) AT5G02110 54 / 5e-08 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018520 [exp] 439 / 3e-155 AT4G03270 163 / 4e-48 Cyclin D6;1 (.1) Lus10033736 [exp] 314 / 2e-105 AT4G03270 221 / 5e-70 Cyclin D6;1 (.1) Lus10031608 [exp] 276 / 7e-91 AT4G03270 211 / 4e-66 Cyclin D6;1 (.1) Lus10018411 [exp] 176 / 2e-52 AT4G03270 152 / 4e-44 Cyclin D6;1 (.1) Lus10002587 [exp] 171 / 8e-51 AT4G03270 169 / 8e-51 Cyclin D6;1 (.1) Lus10010709 [exp] 125 / 1e-32 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10029194 [exp] 123 / 4e-32 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10014089 [exp] 105 / 3e-25 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10019825 [exp] 103 / 1e-24 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118600 [exp] 294 / 5e-98 AT4G03270 244 / 2e-79 Cyclin D6;1 (.1) Potri.013G149000 [exp] 280 / 6e-93 AT4G03270 231 / 1e-74 Cyclin D6;1 (.1) Potri.011G040900 [exp] 257 / 7e-84 AT4G03270 213 / 1e-67 Cyclin D6;1 (.1) Potri.004G032100 [exp] 238 / 2e-76 AT4G03270 216 / 6e-69 Cyclin D6;1 (.1) Potri.011G040500 [exp] 213 / 2e-67 AT4G03270 178 / 7e-55 Cyclin D6;1 (.1) Potri.002G103500 [exp] 127 / 3e-33 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.008G146600 [exp] 121 / 2e-31 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.005G157800 [exp] 115 / 2e-29 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.010G095200 [exp] 112 / 4e-28 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.002G119000 [exp] 108 / 6e-27 AT4G37630 119 / 4e-31 cyclin d5;1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039738 pacid=23165070 polypeptide=Lus10039738 locus=Lus10039738.g ID=Lus10039738.BGIv1.0 annot-version=v1.0 ATGGAATTCGAGCTAGAAAACCCACTAACCAGCTTCTGTAACCATCACCAAGACGATCATCAACACCTCCATTCTTCTCTCTTCCTCGTCGAATCTCAAC ACATGCCTTCCCTTTCTTCCTACGCCGTCTCCTTCCGTCAGAAAACCGTCTCTTCCATCTCACAGGCATCGTCCAGATTCGACCCGTTCTTGTCTTACCT CGCCGTCAACTACCTCGACCGGTTCTTATCCACCCGAGAATTCCCGCAAGAGAAGCCATGGGTTATCAATCTCCTCGCAGTCTCATGCATCTCTCTAGCA GTCAAAATGATGAACCGAACCTCCACAGATCTCTCTCTCAACGACATTCAGGAGAATGTCAACAATGGAGGAGGAGGAATGATCTTCGACGCGCAGACGG TTCAGAGGATGGAGACGATAATCCTGGGAGCGTTGAAATGGAGAATGCGATCCGTCACTCCATTCTCGTTCATCCCTTTCTTCACTAATTACTTCTCCAA ACTGAAGGACCCTCCGCCATTGAAGCAGGCGTTGAGAGCTCGCGCTGTTGAAATCATACTCAGAGCTCAGAATGAGGTGAAGCTGATAGGGTTTAAGCCA TCAGTGATTGCAGCATCGGGGCTTCTGAGTTCCTGCCATGAGCTATTCCCGTTGCAGTTTTCGTGCTTCAGAGATTCAATCCTTAGCTGTTCATATGTAA ATAAGGAAATGGTGGGGGAGTGCTACAAGGAGATGCAAGAGATGGCAAAGGAAGAGTACGAGTCAGTGATGGACAGAGCGTCGAGCTCCTACTCAGATAC CGCGGTCAACGTGCTTGACCGGCAGTTCCTGAGCTCGTCTTCGTGGTCAGATAGTGAAGATGATGCAGAGGAAGAAGTAAAGAAAGGGACCATTGACGTC TCGGGCTCAGGCAGTTGCAGTTTCAGCAGAAGTACTAGTGCCAACGTTCCCAGTACTAATACTACTGGGGAAGTGGTACAAAGATCATCAGACGAAACGG ATCAGGCAGGGGAAATCATGGTGATGATGATCAACGGCAGCAAGGATGCCAAGAGGAGGAAGATTAACACTGATTACTACTGTAATTAA
AA sequence Show only first row Show all	>Lus10039738 pacid=23165070 polypeptide=Lus10039738 locus=Lus10039738.g ID=Lus10039738.BGIv1.0 annot-version=v1.0 MEFELENPLTSFCNHHQDDHQHLHSSLFLVESQHMPSLSSYAVSFRQKTVSSISQASSRFDPFLSYLAVNYLDRFLSTREFPQEKPWVINLLAVSCISLA VKMMNRTSTDLSLNDIQENVNNGGGGMIFDAQTVQRMETIILGALKWRMRSVTPFSFIPFFTNYFSKLKDPPPLKQALRARAVEIILRAQNEVKLIGFKP SVIAASGLLSSCHELFPLQFSCFRDSILSCSYVNKEMVGECYKEMQEMAKEEYESVMDRASSSYSDTAVNVLDRQFLSSSSWSDSEDDAEEEVKKGTIDV SGSGSCSFSRSTSANVPSTNTTGEVVQRSSDETDQAGEIMVMMINGSKDAKRRKINTDYYCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	0	1
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	1.0	0.9821
AT1G14600	GARP		Homeodomain-like superfamily p...		Lus10035093 [exp]	1.4	0.9809
AT5G51560			Leucine-rich repeat protein ki...		Lus10031703 [exp]	2.8	0.9781
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000473 [exp]	3.5	0.9707
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	4.6	0.9791
AT3G05470			Actin-binding FH2 (formin homo...		Lus10004505 [exp]	5.2	0.9653
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009960 [exp]	5.7	0.9653
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	7.4	0.9726
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10037027 [exp]	7.4	0.9616
AT3G63300		FKD1	FORKED 1 (.1.2)		Lus10014704 [exp]	7.7	0.9596

Compare expression of checked genes

Lus10039738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.