Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03280 292 / 7e-101 PGR1, PETC PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) AT5G13430 54 / 1e-08 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) AT5G13440 54 / 1e-08 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018521 [exp] 399 / 4e-143 AT4G03280 306 / 1e-106 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Lus10028416 [exp] 55 / 2e-09 AT5G13440 265 / 3e-91 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10031982 [exp] 55 / 8e-09 AT5G13430 379 / 4e-134 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10035118 [exp] 55 / 8e-09 AT5G13430 379 / 8e-134 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10041870 [exp] 55 / 8e-09 AT5G13430 378 / 1e-133 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10041513 [exp] 55 / 1e-08 AT5G13430 376 / 9e-133 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Lus10012580 [exp] 54 / 1e-08 AT5G13430 373 / 2e-131 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118500 [exp] 322 / 1e-112 AT4G03280 318 / 4e-111 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Potri.013G148900 [exp] 320 / 9e-112 AT4G03280 311 / 3e-108 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2) Potri.003G162200 [exp] 56 / 2e-09 AT5G13430 417 / 8e-149 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1) Potri.001G067900 [exp] 55 / 7e-09 AT5G13430 413 / 4e-147 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10039739 pacid=23165065 polypeptide=Lus10039739 locus=Lus10039739.g ID=Lus10039739.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCAACTCTCTCCCCCGCCACGCACTCCCAGCTTTGCTCAAGCAAAAGTGGGATTTCCTCTCCGGCTAATGCTGCCCTGTTAACCAAACCGG CCAAGACCCAGTTTTGCTCTAGCAAGAGGATGATGAAAGTCACCTGCCAGGCTACGAGTATCCCTGCTGATCGAGTTCCTGACATGGGTAAGAGGGAGCT GATGAACTTGCTTCTTCTCGGAGCTCTTTCACTACCAACTGCTGGGATGCTGGTTCCTTATGCTTCCTTCTTTGTCCCTGCCGGATCTGGAGGTGCCGGA GGTGGTACAGTGGCTAAGGACGCCGTTGGAAATGATGTTATTGCCGAGGAATGGCTCAAGACTCATGGCCCCGGTGACCGAACCCTCACTCAAGGGCTGA AGGGAGATCCTACTTATCTTGTGGTGGAGAAAGACAGAAACCTTGCGATCTACGGTATCAATGCAGTCTGCACCCATCTCGGTTGTGTTGTGCCGTTCAA TGCTGCTGAGAACAAGTTCATCTGCCCTTGCCATGGATCCCAATACAATGATCAAGGCAGAGTTGTTCGAGGACCCGCTCCATTGTCGTTGGCATTGGCT CATGCCGATATAGTTGAGGGAAAGGTGGTGTTTGTTCCGTGGGTGGAAACCGATTTCAGAACTGGAGAAGCACCATGGTGGTCTTAG
AA sequence Show only first row Show all	>Lus10039739 pacid=23165065 polypeptide=Lus10039739 locus=Lus10039739.g ID=Lus10039739.BGIv1.0 annot-version=v1.0 MASSTLSPATHSQLCSSKSGISSPANAALLTKPAKTQFCSSKRMMKVTCQATSIPADRVPDMGKRELMNLLLLGALSLPTAGMLVPYASFFVPAGSGGAG GGTVAKDAVGNDVIAEEWLKTHGPGDRTLTQGLKGDPTYLVVEKDRNLAIYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNDQGRVVRGPAPLSLALA HADIVEGKVVFVPWVETDFRTGEAPWWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10039739 [exp]	0	1
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10018521 [exp]	1.0	0.9894
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10026241 [exp]	1.7	0.9783
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10042429 [exp]	2.4	0.9784
AT1G18060			unknown protein		Lus10017999 [exp]	2.8	0.9740
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Lus10039912 [exp]	3.3	0.9650
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10033434 [exp]	3.6	0.9592
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10041904 [exp]	3.9	0.9711
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10005314 [exp]	4.1	0.9504
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10028451 [exp]	4.9	0.9685
AT1G78995			unknown protein		Lus10033323 [exp]	4.9	0.9625

Compare expression of checked genes

Lus10039739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.