Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20340 553 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28680 502 / 3e-174 TYRDC, TYRDC1 L-TYROSINE DECARBOXYLASE 1, L-tyrosine decarboxylase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018522 [exp] 991 / 0 AT2G20340 569 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022856 [exp] 573 / 0 AT2G20340 794 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10024966 [exp] 498 / 2e-173 AT2G20340 706 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10012601 [exp] 110 / 8e-29 AT2G20340 100 / 1e-25 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G052800 [exp] 582 / 0 AT2G20340 553 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.013G052900 [exp] 581 / 0 AT2G20340 555 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.016G114300 [exp] 579 / 0 AT2G20340 552 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G255600 [exp] 572 / 0 AT2G20340 753 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.004G036200 [exp] 569 / 0 AT2G20340 596 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00282 [flax] [poplar] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Lus10039740 pacid=23165158 polypeptide=Lus10039740 locus=Lus10039740.g ID=Lus10039740.BGIv1.0 annot-version=v1.0 ATGGGCAGCTTAGATTCAAACATTCCAGCAGAAGAACTCGCCACGACCACCACCGAATTCAAGCCTTTAAACCCAGAAGAGTTCCGGCAACAAGCCCACC AAATGGTGGACTTCATCGCAGATTACTACACCAAAATCGAGTCCTACCCTGTTCTTTCCCAAGTTCAGCCAGGGTACCTCCACTCCCAGCTCCCGGAATC GCCGCCATACCGGCCGGAATCGATGGAGTCGATCATGAAGGATGTTCAGAGCCAGATTATACCGGGAATGACCCACTGGCTTAGCCCTAATTTCTTTGGG TTTTTTCCTGCAACGGTTAGCACCTCTGCTTTTTTGGGAGAAATGCTCTGCACTTGCTTTAACTCTGTTGGATTCAATTGGCTGGCTTCCCCTGCATCGA CTGAGCTTGAGATGGTTGTTATGGATTGGCTTGCTGTTGCTCTTAAGCTCCCTTCTTCCTTCATGTTTTCAGGGACAGGTGGCGGGGTGATCCACAACAC CACCAGCGAAGCCGTTCTCGTCACTCTCGTCGCGGCAAGAGATCGAGCACTTGGTGTGCACGGCGACGGCGGCGGAAACAATTCCAACCGCCTCTGGAAG CTCTCCGTCTATGCCTCCGATCAGACCCATTCCACATTCTCCAAGGCGTGCAAGATCGCCGGGATTAATCCAGCGAACATCCGGTCTCTACCCACTTCGA TTTCCAACGGGTTTGCTCTCTCGCCGGAGATTCTCCGGCGAGCGGTGGAGGATGACGTTGCGGCGGGGTTGATCCCGCTTTATCTGTGTACAACGGTGGG GACCACTTCCACCACTGCCGTTGACCCGATCGGTGCTCTGGCAGACGTGGCGCGGGATTACGGGGTTTGGGTCCACGTGGACTGCGCTTACGGCGGGAGC GCGTGTATATGCCCTGAGTTTAGGCACTACTTGAACGGGGTGGAACGGGTTGATTCATTGAGTCTCAGCCCGCACAAGTGGCTGCTTAGTTACCTTGATT GTTGTTGCTTGTGGGTCAAGGAACCGAGCCGGTTGGTTCAGTCGCTGAGCACCAACCCGGAGTATTTGAAGAACAAACCGAGCGAGTCGAGCTCGGTGGT CGACTTCAAAGACTGGCAGGTGGGTACGGGGCGGAGGTTCAAGTCATTGAGGCTGTGGCTAGTGATGAGGAGCTACGGCATGGCGAACCTGCAGAGCCAC ATCCGGTCGGATGTGAGGGTNNNNNNNNATGTCAGGCTAGCTAAGACGTTCGAGAGGCTGGTCCGGTCTGACCAGAGGTTTGAGGTTGTTGTACCAAGAT TGTTTGCATTGGTTTGTTTCCGGTTCATTCCGAGACAGAGGAACGGGTCGGTCACAAACTGGGTCGAGGTGGCGAACCGGAAGCTGTTGGATTGGGTCAA CGGTACGGGTCGGGTATATATGACGCATACGGCGGTGGGAGGAGAGTACATGTTGAGGTTTGCCGTCGGAGCTACGCTGACGGAGGAATGCCACGTGTTG GCCGCGTGGAAGCTCATAAAGGAAGGAGCTGATGGATTGGAGAAGAGCTTGAGTTAA
AA sequence Show only first row Show all	>Lus10039740 pacid=23165158 polypeptide=Lus10039740 locus=Lus10039740.g ID=Lus10039740.BGIv1.0 annot-version=v1.0 MGSLDSNIPAEELATTTTEFKPLNPEEFRQQAHQMVDFIADYYTKIESYPVLSQVQPGYLHSQLPESPPYRPESMESIMKDVQSQIIPGMTHWLSPNFFG FFPATVSTSAFLGEMLCTCFNSVGFNWLASPASTELEMVVMDWLAVALKLPSSFMFSGTGGGVIHNTTSEAVLVTLVAARDRALGVHGDGGGNNSNRLWK LSVYASDQTHSTFSKACKIAGINPANIRSLPTSISNGFALSPEILRRAVEDDVAAGLIPLYLCTTVGTTSTTAVDPIGALADVARDYGVWVHVDCAYGGS ACICPEFRHYLNGVERVDSLSLSPHKWLLSYLDCCCLWVKEPSRLVQSLSTNPEYLKNKPSESSSVVDFKDWQVGTGRRFKSLRLWLVMRSYGMANLQSH IRSDVRXXXXVRLAKTFERLVRSDQRFEVVVPRLFALVCFRFIPRQRNGSVTNWVEVANRKLLDWVNGTGRVYMTHTAVGGEYMLRFAVGATLTEECHVL AAWKLIKEGADGLEKSLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10039740 [exp]	0	1
AT4G02920			unknown protein		Lus10042685 [exp]	1.4	0.9320
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10025676 [exp]	1.7	0.9475
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015538 [exp]	3.7	0.9007
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10033572 [exp]	5.5	0.9069
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10041036 [exp]	5.7	0.8890
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10038202 [exp]	6.2	0.8714
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10005411 [exp]	7.7	0.9042
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	8.1	0.8834
					Lus10015426 [exp]	8.7	0.8770
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10042720 [exp]	10.7	0.9141

Compare expression of checked genes

Lus10039740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.